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Ap1m1 adaptor related protein complex 1 subunit mu 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 306332, updated on 5-Aug-2018

Summary

Official Symbol
Ap1m1provided by RGD
Official Full Name
adaptor related protein complex 1 subunit mu 1provided by RGD
Primary source
RGD:1307653
See related
Ensembl:ENSRNOG00000014454
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Testes (RPKM 151.0), Thymus (RPKM 143.5) and 9 other tissues See more
Orthologs

Genomic context

See Ap1m1 in Genome Data Viewer
Location:
16p14
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (19288354..19303818, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 16 NC_005115.3 (19148665..19164129, complement)

Chromosome 16 - NC_005115.4Genomic Context describing neighboring genes Neighboring gene epidermal growth factor receptor pathway substrate 15-like 1 Neighboring gene Kruppel-like factor 2 Neighboring gene family with sequence similarity 32, member A Neighboring gene calcium and integrin binding family member 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC125095

Gene Ontology Provided by RGD

Process Evidence Code Pubs
endosome to melanosome transport IEA
Inferred from Electronic Annotation
more info
 
endosome to melanosome transport ISO
Inferred from Sequence Orthology
more info
 
intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 
melanosome organization IEA
Inferred from Electronic Annotation
more info
 
melanosome organization ISO
Inferred from Sequence Orthology
more info
 
vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
clathrin adaptor complex IEA
Inferred from Electronic Annotation
more info
 
clathrin-coated vesicle membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
AP-1 complex subunit mu-1
Names
AP-mu chain family member mu1A
adapter-related protein complex 1 subunit mu-1
adaptor protein complex AP-1 mu-1 subunit
adaptor protein complex AP-1 subunit mu-1
adaptor-related protein complex 1, mu 1 subunit
adaptor-related protein complex AP-1, mu subunit 1
clathrin assembly protein complex 1 medium chain 1
clathrin assembly protein complex 1 mu-1 medium chain 1
golgi adaptor HA1/AP1 adaptin mu-1 subunit
mu-adaptin 1
mu1A-adaptin

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044239.1NP_001037704.1  AP-1 complex subunit mu-1

    See identical proteins and their annotated locations for NP_001037704.1

    Status: PROVISIONAL

    Source sequence(s)
    BC107903
    UniProtKB/Swiss-Prot
    Q32Q06
    Related
    ENSRNOP00000019350.4, ENSRNOT00000019350.4
    Conserved Domains (1) summary
    cd09258
    Location:153422
    AP-1_Mu1A_Cterm; C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005115.4 Reference Rnor_6.0 Primary Assembly

    Range
    19288354..19303818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000084.1 Alternate Rn_Celera

    Range
    17804251..17819715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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