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Rgr retinal G protein coupled receptor [ Rattus norvegicus (Norway rat) ]

Gene ID: 306307, updated on 2-Oct-2018

Summary

Official Symbol
Rgrprovided by RGD
Official Full Name
retinal G protein coupled receptorprovided by RGD
Primary source
RGD:1309174
See related
Ensembl:ENSRNOG00000012396
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Restricted expression toward (RPKM 1.4) See more
Orthologs

Genomic context

See Rgr in Genome Data Viewer
Location:
16p14
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (14286323..14300972, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 16 NC_005115.3 (14188718..14203346, complement)

Chromosome 16 - NC_005115.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103693907 Neighboring gene coiled-coil serine-rich protein 2 Neighboring gene leucine-rich repeat, Ig-like and transmembrane domains 1 Neighboring gene leucine-rich repeat, Ig-like and transmembrane domains 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
G protein-coupled photoreceptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
biological_process ND
No biological Data available
more info
 
cellular response to light stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
detection of visible light IEA
Inferred from Electronic Annotation
more info
 
phototransduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
visual perception IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
RPE-retinal G protein-coupled receptor

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107299.1NP_001100769.1  RPE-retinal G protein-coupled receptor

    See identical proteins and their annotated locations for NP_001100769.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474031
    UniProtKB/TrEMBL
    D3ZG87
    Related
    ENSRNOP00000017038.3, ENSRNOT00000017038.4
    Conserved Domains (1) summary
    cl18967
    Location:38139
    Csx17_I-U; CRISPR/Cas system-associated protein Csx17

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005115.4 Reference Rnor_6.0 Primary Assembly

    Range
    14286323..14300972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017600088.1XP_017455577.1  RPE-retinal G protein-coupled receptor isoform X1

  2. XM_017600089.1XP_017455578.1  RPE-retinal G protein-coupled receptor isoform X2

Alternate Rn_Celera

Genomic

  1. AC_000084.1 Alternate Rn_Celera

    Range
    13059620..13074428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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