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Rpgrip1 RPGR interacting protein 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 305850, updated on 3-Jan-2019

Summary

Official Symbol
Rpgrip1provided by RGD
Official Full Name
RPGR interacting protein 1provided by RGD
Primary source
RGD:1310807
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Testes (RPKM 198.2), Thymus (RPKM 31.3) and 5 other tissues See more
Orthologs

Genomic context

See Rpgrip1 in Genome Data Viewer
Location:
15p14
Exon count:
25
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (28521287..28575046)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 15 NC_005114.3 (32331555..32385312)

Chromosome 15 - NC_005114.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102553296 Neighboring gene heterogeneous nuclear ribonucleoprotein C Neighboring gene SPT16 homolog, facilitates chromatin remodeling subunit Neighboring gene 60S ribosomal protein L9 pseudogene Neighboring gene chromodomain helicase DNA binding protein 8

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC114442

Gene Ontology Provided by RGD

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
detection of light stimulus involved in visual perception ISO
Inferred from Sequence Orthology
more info
 
eye photoreceptor cell development ISO
Inferred from Sequence Orthology
more info
 
neural precursor cell proliferation ISO
Inferred from Sequence Orthology
more info
 
retina development in camera-type eye ISO
Inferred from Sequence Orthology
more info
 
visual perception ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
axoneme ISO
Inferred from Sequence Orthology
more info
 
ciliary rootlet IDA
Inferred from Direct Assay
more info
PubMed 
ciliary transition zone IDA
Inferred from Direct Assay
more info
PubMed 
cilium ISO
Inferred from Sequence Orthology
more info
 
non-motile cilium ISO
Inferred from Sequence Orthology
more info
 
photoreceptor connecting cilium ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
X-linked retinitis pigmentosa GTPase regulator-interacting protein 1
Names
retinitis pigmentosa GTPase regulator interacting protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005114.4 Reference Rnor_6.0 Primary Assembly

    Range
    28521287..28575046
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017599872.1XP_017455361.1  X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 isoform X7

  2. XM_017599867.1XP_017455356.1  X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 isoform X1

  3. XM_017599870.1XP_017455359.1  X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 isoform X5

  4. XM_017599873.1XP_017455362.1  X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 isoform X9

  5. XM_008770635.2XP_008768857.1  X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 isoform X8

    Conserved Domains (1) summary
    COG1196
    Location:201527
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
  6. XM_006251921.3XP_006251983.1  X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 isoform X3

    See identical proteins and their annotated locations for XP_006251983.1

    Conserved Domains (2) summary
    cd00030
    Location:751850
    C2; C2 domain
    pfam11618
    Location:569704
    C2-C2_1; First C2 domain of RPGR-interacting protein 1
  7. XM_017599868.1XP_017455357.1  X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 isoform X2

  8. XM_017599869.1XP_017455358.1  X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 isoform X4

  9. XM_017599871.1XP_017455360.1  X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 isoform X6

Alternate Rn_Celera

Genomic

  1. AC_000083.1 Alternate Rn_Celera

    Range
    25116975..25171719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006221931.3XP_006221993.1  X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 isoform X10

    Conserved Domains (2) summary
    cd00030
    Location:751850
    C2; C2 domain
    pfam11618
    Location:569704
    C2-C2_1; First C2 domain of RPGR-interacting protein 1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001030035.1: Suppressed sequence

    Description
    NM_001030035.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from cow: RPGRIP1 (GeneID:282656).
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