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Fbxo34 F-box protein 34 [ Rattus norvegicus (Norway rat) ]

Gene ID: 305830, updated on 3-Apr-2024

Summary

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Official Symbol
Fbxo34provided by RGD
Official Full Name
F-box protein 34provided by RGD
Primary source
RGD:1310108
See related
Ensembl:ENSRNOG00000011704 AllianceGenome:RGD:1310108
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human FBXO34 (F-box protein 34). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 107.0), Testes (RPKM 93.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
15p14
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (23199103..23266929)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (20719395..20787905)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (24254356..24334890)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene DLG associated protein 5 Neighboring gene uncharacterized LOC120096955 Neighboring gene autophagy related 14 Neighboring gene uncharacterized LOC108352900

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
F-box only protein 34

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107257.1 → NP_001100727.1  F-box only protein 34

    See identical proteins and their annotated locations for NP_001100727.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474040
    UniProtKB/TrEMBL
    A6KE53, G3V7J6
    Related
    ENSRNOP00000015777.2, ENSRNOT00000015778.6
    Conserved Domains (1) summary
    pfam12937
    Location:596 → 630
    F-box-like; F-box-like

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    23199103..23266929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063274213.1 → XP_063130283.1  F-box only protein 34 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JV06, B5DF06

  2. XM_039093267.2 → XP_038949195.1  F-box only protein 34 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JV06, B5DF06
    Conserved Domains (1) summary
    pfam12937
    Location:545 → 579
    F-box-like

  3. XM_017599661.3 → XP_017455150.1  F-box only protein 34 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JV06, B5DF06
    Related
    ENSRNOP00000083563.1
    Conserved Domains (1) summary
    pfam12937
    Location:545 → 579
    F-box-like

  4. XM_063274212.1 → XP_063130282.1  F-box only protein 34 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JV06, B5DF06

  5. XM_063274209.1 → XP_063130279.1  F-box only protein 34 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JV06, B5DF06

  6. XM_063274211.1 → XP_063130281.1  F-box only protein 34 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JV06, B5DF06

  7. XM_063274210.1 → XP_063130280.1  F-box only protein 34 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JV06, B5DF06

  8. XM_063274215.1 → XP_063130285.1  F-box only protein 34 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JV06, B5DF06

  9. XM_063274216.1 → XP_063130286.1  F-box only protein 34 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JV06, B5DF06

  10. XM_063274214.1 → XP_063130284.1  F-box only protein 34 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JV06, B5DF06
Nucleotide Protein Strain
Heading Accession and Version

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