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dlx4b distal-less homeobox 4b [ Danio rerio (zebrafish) ]

Gene ID: 30581, updated on 16-Oct-2021

Summary

Official Symbol
dlx4bprovided by ZNC
Official Full Name
distal-less homeobox 4bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-990415-50
See related
Ensembl:ENSDARG00000071560
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
dlx7; fj03c01; wu:fj03c01; zgc:109858
Orthologs
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Genomic context

See dlx4b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (5719616..5728729, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (5684659..5693772, complement)
103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (6057553..6066666)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene microRNA mir-2186 Neighboring gene distal-less homeobox 3b Neighboring gene si:ch211-131k2.2 Neighboring gene uncharacterized LOC110440138 Neighboring gene K(lysine) acetyltransferase 7b Neighboring gene prostaglandin E synthase 3 like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC109858

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within auditory receptor cell fate specification IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within camera-type eye development IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in embryo development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within embryonic viscerocranium morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within embryonic viscerocranium morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within endocrine system development IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within inner ear receptor cell development IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within lens fiber cell differentiation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within neuron development IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within olfactory placode formation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within otic placode formation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within otic vesicle formation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within otic vesicle morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within trigeminal nerve development IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
homeobox protein Dlx4b
Names
DLX-7
distal-less homeobox gene 4b
distal-less homeobox gene 7
distal-less homeobox protein 4b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131318.1NP_571393.1  homeobox protein Dlx4b

    See identical proteins and their annotated locations for NP_571393.1

    Status: PROVISIONAL

    Source sequence(s)
    U67845
    UniProtKB/Swiss-Prot
    Q98878
    Related
    ENSDARP00000096665.2, ENSDART00000105887.3
    Conserved Domains (1) summary
    pfam00046
    Location:132185
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    5719616..5728729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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