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mef2aa myocyte enhancer factor 2aa [ Danio rerio (zebrafish) ]

Gene ID: 30564, updated on 12-Sep-2021

Summary

Official Symbol
mef2aaprovided by ZNC
Official Full Name
myocyte enhancer factor 2aaprovided by ZNC
Primary source
ZFIN:ZDB-GENE-990415-163
See related
Ensembl:ENSDARG00000031756
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
mef2; mef2a; wu:fd19d02; etID309779.18
Orthologs
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Genomic context

See mef2aa in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (23187493..23361540)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (23198545..23369782)
103 previous assembly Zv9 (GCF_000002035.4) 18 NC_007129.5 (22967441..23139595)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a Neighboring gene uncharacterized LOC108179979 Neighboring gene core-binding factor subunit beta Neighboring gene uncharacterized LOC103909137 Neighboring gene multiple C2 domains, transmembrane 2a Neighboring gene uncharacterized LOC103909138

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
myocyte enhancer factor 2aa; myocyte-specific enhancer factor 2A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131301.2NP_571376.2  myocyte enhancer factor 2aa

    Status: VALIDATED

    Source sequence(s)
    BX323877, EB903808, EH440607, EH466515
    UniProtKB/TrEMBL
    Q1LXH6
    Related
    ENSDARP00000116960.1, ENSDART00000148106.3
    Conserved Domains (2) summary
    cd00265
    Location:278
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:98151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    23187493..23361540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467575.1XP_021323250.1  myocyte-specific enhancer factor 2A isoform X1

    Conserved Domains (2) summary
    cd00265
    Location:278
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:141196
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
  2. XM_021467574.1XP_021323249.1  myocyte-specific enhancer factor 2A isoform X1

    Conserved Domains (2) summary
    cd00265
    Location:278
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:141196
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
  3. XM_021467576.1XP_021323251.1  myocyte-specific enhancer factor 2A isoform X2

    Conserved Domains (2) summary
    cd00265
    Location:278
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:141196
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
  4. XM_021467578.1XP_021323253.1  myocyte-specific enhancer factor 2A isoform X6

    Related
    ENSDARP00000157383.1, ENSDART00000181762.1
    Conserved Domains (2) summary
    cd00265
    Location:278
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:98151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
  5. XM_021467580.1XP_021323255.1  myocyte-specific enhancer factor 2A isoform X8

    Related
    ENSDARP00000123273.1, ENSDART00000147446.2
    Conserved Domains (2) summary
    cd00265
    Location:278
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:98151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
  6. XM_021467577.1XP_021323252.1  myocyte-specific enhancer factor 2A isoform X5

    Conserved Domains (2) summary
    cd00265
    Location:278
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:97152
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
  7. XM_021467579.1XP_021323254.1  myocyte-specific enhancer factor 2A isoform X7

    Related
    ENSDARP00000021792.9, ENSDART00000005740.11
    Conserved Domains (2) summary
    cd00265
    Location:278
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:97152
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
  8. XM_005159042.4XP_005159099.1  myocyte-specific enhancer factor 2A isoform X3

    See identical proteins and their annotated locations for XP_005159099.1

    Related
    ENSDARP00000110624.2, ENSDART00000124818.4
    Conserved Domains (2) summary
    cd00265
    Location:278
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:142196
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
  9. XM_005159044.4XP_005159101.1  myocyte-specific enhancer factor 2A isoform X4

    Conserved Domains (2) summary
    cd00265
    Location:278
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:142196
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
  10. XM_005159045.4XP_005159102.1  myocyte-specific enhancer factor 2A isoform X9

    UniProtKB/TrEMBL
    A0A0R4IRM3
    Related
    ENSDARP00000139238.1, ENSDART00000171594.2
    Conserved Domains (2) summary
    cd00265
    Location:278
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:98152
    HJURP_C; Holliday junction regulator protein family C-terminal repeat
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