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dlx4a distal-less homeobox 4a [ Danio rerio (zebrafish) ]

Gene ID: 30561, updated on 22-Nov-2020

Summary

Official Symbol
dlx4aprovided by ZNC
Official Full Name
distal-less homeobox 4aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-980526-73
See related
Ensembl:ENSDARG00000011956
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
dlx; dlx8; DLX-8
Orthologs

Genomic context

See dlx4a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (34670057..34681422)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (34540549..34551914)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (34755343..34766718)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene tachykinin precursor 4 Neighboring gene zinc finger-like gene 1 Neighboring gene dual specificity phosphatase 3b Neighboring gene thyroid hormone receptor alpha a

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
embryo development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chromatin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
homeobox protein Dlx4a
Names
distal-less homeobox gene 4a
distal-less homeobox gene 8
distal-less homeobox protein 4a

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131300.2NP_571375.1  homeobox protein Dlx4a

    See identical proteins and their annotated locations for NP_571375.1

    Status: VALIDATED

    Source sequence(s)
    AL590145, EH441414, EH591391
    UniProtKB/Swiss-Prot
    Q98879
    Related
    ENSDARP00000122639.1, ENSDART00000133457.3
    Conserved Domains (2) summary
    COG5576
    Location:98206
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:126179
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    34670057..34681422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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