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Fcrl6 Fc receptor-like 6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 305103, updated on 18-Apr-2019

Summary

Official Symbol
Fcrl6provided by RGD
Official Full Name
Fc receptor-like 6provided by RGD
Primary source
RGD:1563939
See related
Ensembl:ENSRNOG00000000055
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Gp42
Expression
Biased expression in Spleen (RPKM 3.7), Heart (RPKM 3.0) and 7 other tissues See more
Orthologs

Genomic context

See Fcrl6 in Genome Data Viewer
Location:
13q24
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (90982814..90992415, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 13 NC_005112.3 (95501915..95511516, complement)

Chromosome 13 - NC_005112.4Genomic Context describing neighboring genes Neighboring gene V-set and immunoglobulin domain containing 8 Neighboring gene SLAM family member 8 Neighboring gene dual specificity phosphatase 23 Neighboring gene C-reactive protein

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
MHC class II protein binding ISO
Inferred from Sequence Orthology
more info
PubMed 
phosphatase binding ISO
Inferred from Sequence Orthology
more info
PubMed 
protein phosphatase binding ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
anchored component of membrane IEA
Inferred from Electronic Annotation
more info
 
external side of plasma membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
cell surface glycoprotein gp42

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164726.1NP_001158198.1  cell surface glycoprotein gp42 precursor

    See identical proteins and their annotated locations for NP_001158198.1

    Status: VALIDATED

    Source sequence(s)
    AABR07021773
    UniProtKB/TrEMBL
    F1LME1
    Related
    ENSRNOP00000000059.7, ENSRNOT00000000059.7
    Conserved Domains (3) summary
    smart00410
    Location:3199
    IG_like; Immunoglobulin like
    pfam13895
    Location:23106
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:115188
    Ig_3; Immunoglobulin domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005112.4 Reference Rnor_6.0 Primary Assembly

    Range
    90982814..90992415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000081.1 Alternate Rn_Celera

    Range
    84671572..84681173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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