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csnk2a1 casein kinase 2, alpha 1 polypeptide [ Danio rerio (zebrafish) ]

Gene ID: 30502, updated on 3-Oct-2019

Summary

Official Symbol
csnk2a1provided by ZNC
Official Full Name
casein kinase 2, alpha 1 polypeptideprovided by ZNC
Primary source
ZFIN:ZDB-GENE-990415-27
See related
Ensembl:ENSDARG00000002082
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
ck2a1; wu:fi38e04; wu:fi38h03

Genomic context

See csnk2a1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (31436757..31452516, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (31478830..31494575, complement)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (33740930..33756680, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene scleraxis bHLH transcription factor b Neighboring gene zgc:194210 Neighboring gene protein tyrosine phosphatase 4A3b Neighboring gene N-myc downstream regulated 1b

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
kinase activity IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
protein kinase activity IEA
Inferred from Electronic Annotation
more info
 
protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
peptidyl-serine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
peptidyl-threonine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phosphorylation IEA
Inferred from Electronic Annotation
more info
 
protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 
regulation of cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein kinase CK2 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
casein kinase 2, alpha 1 polypeptide
Names
casein kinase 2 alpha 1
ck2 alpha
NP_571327.1
XP_005158227.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131252.1NP_571327.1  casein kinase 2, alpha 1 polypeptide

    See identical proteins and their annotated locations for NP_571327.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044403
    UniProtKB/TrEMBL
    Q803N7
    Related
    ENSDARP00000006001.8, ENSDART00000008297.10
    Conserved Domains (2) summary
    cd14132
    Location:20325
    STKc_CK2_alpha; Catalytic subunit (alpha) of the Serine/Threonine Kinase, Casein Kinase 2
    pfam00069
    Location:39324
    Pkinase; Protein kinase domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    31436757..31452516 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158170.3XP_005158227.1  casein kinase 2, alpha 1 polypeptide isoform X1

    See identical proteins and their annotated locations for XP_005158227.1

    UniProtKB/TrEMBL
    Q803N7
    Related
    ENSDARP00000056550.4, ENSDART00000056551.6
    Conserved Domains (2) summary
    cd14132
    Location:20325
    STKc_CK2_alpha; Catalytic subunit (alpha) of the Serine/Threonine Kinase, Casein Kinase 2
    pfam00069
    Location:39324
    Pkinase; Protein kinase domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394962.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    303572..319194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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