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tcp1 t-complex 1 [ Danio rerio (zebrafish) ]

Gene ID: 30477, updated on 24-Nov-2018

Summary

Official Symbol
tcp1provided by ZNC
Official Full Name
t-complex 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-990714-24
See related
Ensembl:ENSDARG00000017891
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
fa13h08; CHUNP6875; wu:fa13h08; wu:fc95g06
Orthologs

Genomic context

See tcp1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (2421689..2443884)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (2482198..2504507)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene coiled-coil and C2 domain containing 2A Neighboring gene pleckstrin homology and RhoGEF domain containing G1 Neighboring gene uncharacterized LOC103909650 Neighboring gene inactive serine protease 35-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
Kupffer's vesicle development IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein folding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chaperonin-containing T-complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
T-complex protein 1 subunit alpha
Names
cct1
t-complex polypeptide 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131230.1NP_571305.1  T-complex protein 1 subunit alpha

    See identical proteins and their annotated locations for NP_571305.1

    Status: PROVISIONAL

    Source sequence(s)
    AF143493
    UniProtKB/TrEMBL
    Q9W792
    Related
    ENSDARP00000148755.1, ENSDART00000180200.1
    Conserved Domains (2) summary
    cd03335
    Location:10536
    TCP1_alpha; TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...
    TIGR02340
    Location:6541
    chap_CCT_alpha; T-complex protein 1, alpha subunit

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    2421689..2443884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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