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Galnt9 polypeptide N-acetylgalactosaminyltransferase 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 304571, updated on 5-Jul-2025
Official Symbol
Galnt9provided by RGD
Official Full Name
polypeptide N-acetylgalactosaminyltransferase 9provided by RGD
Primary source
RGD:1311523
See related
Ensembl:ENSRNOG00000037476 AllianceGenome:RGD:1311523
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT9 (polypeptide N-acetylgalactosaminyltransferase 9). [provided by Alliance of Genome Resources, Jul 2025]
Expression
Restricted expression toward (RPKM 75.8) See more
Orthologs
human mouse all
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See Galnt9 in Genome Data Viewer
Location:
12q16
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (51710176..51788388, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (46050395..46128626, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (52106506..52187205, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481216 Neighboring gene DEAD-box helicase 51 Neighboring gene nucleolar complex associated 4 homolog Neighboring gene uncharacterized LOC134481339 Neighboring gene fibrosin-like 1

Go to nucleotide: Graphics FASTA GenBank

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables polypeptide N-acetylgalactosaminyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
polypeptide N-acetylgalactosaminyltransferase 9
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9
NP_001100621.1
NP_001116116.1
XP_008767555.1
XP_063127463.1
XP_063127464.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107151.2 → NP_001100621.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform B

    See identical proteins and their annotated locations for NP_001100621.1

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/TrEMBL
    A6J2A1
    Conserved Domains (3) summary
    cd00161
    Location:100 → 228
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:98 → 226
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl11394
    Location:1 → 87
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. NM_001122644.1 → NP_001116116.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform A

    See identical proteins and their annotated locations for NP_001116116.1

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/TrEMBL
    A6J2A0, D3ZQA1
    Related
    ENSRNOP00000053563.2, ENSRNOT00000056722.5
    Conserved Domains (3) summary
    cd02510
    Location:155 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:467 → 595
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:465 → 593
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    51710176..51788388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008769333.4 → XP_008767555.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

    Conserved Domains (3) summary
    cd02510
    Location:155 → 435
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:448 → 576
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:446 → 574
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_063271393.1 → XP_063127463.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A0G2K4G1
    Related
    ENSRNOP00000073030.2, ENSRNOT00000088839.3

  3. XM_063271394.1 → XP_063127464.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X3

    UniProtKB/TrEMBL
    A6J2A1
Nucleotide Protein Strain
Heading Accession and Version

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