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RGD1559821 similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [ Rattus norvegicus (Norway rat) ]

Gene ID: 304447, updated on 29-Feb-2024

Summary

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Official Symbol
RGD1559821provided by RGD
Official Full Name
similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscleprovided by RGD
Primary source
RGD:1559821
See related
Ensembl:ENSRNOG00000008521 AllianceGenome:RGD:1559821
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
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Genomic context

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See RGD1559821 in Genome Data Viewer
Location:
12q14
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (35124013..35124668, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (29488091..29488746, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (33182394..33183048, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095946 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC120095947 Neighboring gene uncharacterized LOC134481185 Neighboring gene ribosomal protein L7, pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables cytoskeletal motor activity TAS
Traceable Author Statement
more info
 PubMed 
enables microfilament motor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables structural constituent of muscle ISS
Inferred from Sequence or Structural Similarity
more info
  
enables structural constituent of muscle TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in muscle contraction TAS
Traceable Author Statement
more info
 PubMed 
involved_in muscle filament sliding TAS
Traceable Author Statement
more info
 PubMed 
involved_in skeletal muscle tissue development TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of myosin complex TAS
Traceable Author Statement
more info
 PubMed 
part_of unconventional myosin complex TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
myosin light polypeptide 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    35124013..35124668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006249290.3 → XP_006249352.1  myosin light polypeptide 6-like

    See identical proteins and their annotated locations for XP_006249352.1

    UniProtKB/Swiss-Prot
    Q64119
    UniProtKB/TrEMBL
    A0A8I6G5X1
    Related
    ENSRNOP00000081417.1, ENSRNOT00000011278.5
    Conserved Domains (3) summary
    PTZ00184
    Location:5 → 149
    PTZ00184; calmodulin; Provisional
    smart00054
    Location:11 → 39
    EFh; EF-hand, calcium binding motif
    cl08302
    Location:94 → 148
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein Strain
Heading Accession and Version

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