Format

Send to:

Choose Destination

mylpfa myosin light chain, phosphorylatable, fast skeletal muscle a [ Danio rerio (zebrafish) ]

Gene ID: 30429, updated on 19-Sep-2021

Summary

Official Symbol
mylpfaprovided by ZNC
Official Full Name
myosin light chain, phosphorylatable, fast skeletal muscle aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-990712-15
See related
Ensembl:ENSDARG00000053254
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb46; mlc2; mylz; mlc2f; mylz2; sb:cb4; sb:cb46
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See mylpfa in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (32813048..32818536, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (32681334..32686822, complement)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (32950024..32955512, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase Neighboring gene TBC1 domain family, member 10b Neighboring gene PH domain containing endocytic trafficking adaptor 2 Neighboring gene CD2 (cytoplasmic tail) binding protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
myosin light chain, phosphorylatable, fast skeletal muscle a
Names
myosin light chain 2
myosin, light polypeptide 2, skeletal muscle

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131188.2NP_571263.1  myosin light chain, phosphorylatable, fast skeletal muscle a

    See identical proteins and their annotated locations for NP_571263.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045520
    UniProtKB/TrEMBL
    O93409
    Related
    ENSDARP00000069948.4, ENSDART00000075465.5
    Conserved Domains (2) summary
    COG5126
    Location:16165
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd00051
    Location:3088
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    32813048..32818536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394535.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    294135..299623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395227.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    173570..179057 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center