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nr2f5 nuclear receptor subfamily 2, group F, member 5 [ Danio rerio (zebrafish) ]

Gene ID: 30427, updated on 22-Nov-2020

Summary

Official Symbol
nr2f5provided by ZNC
Official Full Name
nuclear receptor subfamily 2, group F, member 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-990415-253
See related
Ensembl:ENSDARG00000033172
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
CO; sv; COUP; svp46; couptf; COUPTFg
Orthologs

Genomic context

See nr2f5 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (46294337..46327301)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (46327621..46360585)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (49358592..49391556)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438002 Neighboring gene bolA family member 1 Neighboring gene uncharacterized LOC101886504 Neighboring gene uncharacterized LOC110438003 Neighboring gene rapunzel Neighboring gene rapunzel 2

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclear receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
anatomical structure development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cranial skeletal system development IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
response to retinoic acid IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to stimulus IEA
Inferred from Electronic Annotation
more info
 
visual perception IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chromatin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
nuclear receptor subfamily 2 group F member 5
Names
COUPTFgamma
seven-up related 46
steroid receptor homolog SVP 46

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131186.1NP_571261.1  nuclear receptor subfamily 2 group F member 5

    See identical proteins and their annotated locations for NP_571261.1

    Status: PROVISIONAL

    Source sequence(s)
    X70300
    UniProtKB/Swiss-Prot
    Q06726
    UniProtKB/TrEMBL
    B3DI15
    Related
    ENSDARP00000040768.6, ENSDART00000040769.7
    Conserved Domains (2) summary
    cd06948
    Location:152387
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:54126
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    46294337..46327301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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