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tbxta T-box transcription factor Ta [ Danio rerio (zebrafish) ]

Gene ID: 30399, updated on 22-Nov-2020

Summary

Official Symbol
tbxtaprovided by ZNC
Official Full Name
T-box transcription factor Taprovided by ZNC
Primary source
ZFIN:ZDB-GENE-980526-437
See related
Ensembl:ENSDARG00000101576
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
T; n; ta; ntl; zft; ZF-N; ZF-T; ntla; cb240; ZF-NTL; Zf-T-A; brachy; id:ibd50; wu:fc80a0; id:ibd5074; wu:fc80a01
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See tbxta in Genome Data Viewer
Location:
chromosome: 19
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (14187540..14191592, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (14325345..14329397, complement)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (30633857..30637909, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 0, group B, member 2b Neighboring gene nudC nuclear distribution protein Neighboring gene AT rich interactive domain 1Ab (SWI-like) Neighboring gene zinc finger DHHC-type palmitoyltransferase 18b

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
transcription regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
Kupffer's vesicle development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
cell fate specification IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
convergent extension involved in axis elongation IGI
Inferred from Genetic Interaction
more info
PubMed 
convergent extension involved in nephron morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
determination of heart left/right asymmetry IMP
Inferred from Mutant Phenotype
more info
PubMed 
determination of left/right asymmetry in diencephalon IMP
Inferred from Mutant Phenotype
more info
PubMed 
determination of left/right asymmetry in lateral mesoderm IMP
Inferred from Mutant Phenotype
more info
 
determination of left/right symmetry IMP
Inferred from Mutant Phenotype
more info
PubMed 
digestive tract development IGI
Inferred from Genetic Interaction
more info
PubMed 
embryonic heart tube morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
heart looping IMP
Inferred from Mutant Phenotype
more info
PubMed 
heart morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
liver development IGI
Inferred from Genetic Interaction
more info
PubMed 
mesoderm development IGI
Inferred from Genetic Interaction
more info
PubMed 
mesoderm development IMP
Inferred from Mutant Phenotype
more info
 
mesoderm formation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mesoderm formation IGI
Inferred from Genetic Interaction
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
notochord cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
notochord development IMP
Inferred from Mutant Phenotype
more info
PubMed 
notochord formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
pancreas development IGI
Inferred from Genetic Interaction
more info
PubMed 
post-anal tail morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
pronephric glomerulus morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of BMP signaling pathway involved in heart jogging IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of endodermal cell fate specification IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
somite development IGI
Inferred from Genetic Interaction
more info
 
somite development IMP
Inferred from Mutant Phenotype
more info
PubMed 
somitogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
somitogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
specification of animal organ position IMP
Inferred from Mutant Phenotype
more info
 
Component Evidence Code Pubs
chromatin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chromatin IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
T-box transcription factor T-A
Names
T, brachyury homolog a
T-box protein ZfT
T-box protein ZfT-A
brachyury protein homolog A
no tail a
no tail protein A
no tail protein A-A
protein T homolog A
t protein homolog A

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131162.1NP_571237.1  T-box transcription factor T-A

    See identical proteins and their annotated locations for NP_571237.1

    Status: PROVISIONAL

    Source sequence(s)
    S57147
    UniProtKB/Swiss-Prot
    Q07998
    Related
    ENSDARP00000141934.1, ENSDART00000164594.2
    Conserved Domains (1) summary
    cd00182
    Location:34216
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    14187540..14191592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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