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hoxa11b homeobox A11b [ Danio rerio (zebrafish) ]

Gene ID: 30382, updated on 6-May-2021

Summary

Official Symbol
hoxa11bprovided by ZNC
Official Full Name
homeobox A11bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-990415-4
See related
Ensembl:ENSDARG00000007009
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
hoxa; Hoxa-; hoxa11; Hoxa-11; im:714264; im:7142641
Orthologs
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Genomic context

See hoxa11b in Genome Data Viewer
Location:
chromosome: 16
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (20904884..20906482)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (21099065..21100663)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (22989314..22990912)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene 3-hydroxyisobutyrate dehydrogenase b Neighboring gene uncharacterized LOC101886298 Neighboring gene homeobox A13b Neighboring gene homeobox A10b Neighboring gene microRNA 196d

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in anatomical structure development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
homeobox protein Hox-A11b
Names
homeo box A11b
homeobox gene A-11
hox-A11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131147.1NP_571222.1  homeobox protein Hox-A11b

    See identical proteins and their annotated locations for NP_571222.1

    Status: PROVISIONAL

    Source sequence(s)
    AF287137
    UniProtKB/Swiss-Prot
    Q9DDU1
    UniProtKB/TrEMBL
    B3DHW9
    Related
    ENSDARP00000005174.4, ENSDART00000006043.6
    Conserved Domains (2) summary
    pfam00046
    Location:214267
    Homeobox; Homeobox domain
    pfam12045
    Location:26165
    DUF3528; Protein of unknown function (DUF3528)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    20904884..20906482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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