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Ccnjl cyclin J-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 303059, updated on 18-Apr-2019

Summary

Official Symbol
Ccnjlprovided by RGD
Official Full Name
cyclin J-likeprovided by RGD
Primary source
RGD:1561384
See related
Ensembl:ENSRNOG00000003893
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 38.4), Lung (RPKM 28.7) and 9 other tissues See more
Orthologs

Genomic context

See Ccnjl in Genome Data Viewer
Location:
10q21
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (29122713..29181610)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (28961450..29020118)

Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene C1q and TNF related 2 Neighboring gene uncharacterized LOC108352074 Neighboring gene fatty acid binding protein 6 Neighboring gene 60S ribosomal protein L34 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC116253

Gene Ontology Provided by RGD

Function Evidence Code Pubs
cyclin-dependent protein serine/threonine kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to protein kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
mitotic cell cycle phase transition IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 
regulation of cyclin-dependent protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cyclin-dependent protein kinase holoenzyme complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037773.4NP_001032862.2  cyclin-J-like protein

    See identical proteins and their annotated locations for NP_001032862.2

    Status: PROVISIONAL

    Source sequence(s)
    AABR07029452
    UniProtKB/TrEMBL
    F1LPN6
    Related
    ENSRNOP00000005171.4, ENSRNOT00000005171.6
    Conserved Domains (2) summary
    pfam02984
    Location:144246
    Cyclin_C; Cyclin, C-terminal domain
    cl00050
    Location:13106
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

    Range
    29122713..29181610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006246133.3XP_006246195.1  cyclin-J-like protein isoform X1

    See identical proteins and their annotated locations for XP_006246195.1

    UniProtKB/TrEMBL
    F1LPN6
    Conserved Domains (2) summary
    pfam02984
    Location:144246
    Cyclin_C; Cyclin, C-terminal domain
    cl00050
    Location:13106
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

Alternate Rn_Celera

Genomic

  1. AC_000078.1 Alternate Rn_Celera

    Range
    27487982..27545122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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