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her6 hairy-related 6 [ Danio rerio (zebrafish) ]

Gene ID: 30288, updated on 9-May-2021

Summary

Official Symbol
her6provided by ZNC
Official Full Name
hairy-related 6provided by ZNC
Primary source
ZFIN:ZDB-GENE-980526-144
See related
Ensembl:ENSDARG00000006514
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
Hes1; HER-6; cb129
Orthologs
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Genomic context

See her6 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (36551083..36552768, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (36573189..36574874, complement)
103 previous assembly Zv9 (GCF_000002035.4) 6 NC_007117.5 (36329655..36331285, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene carboxypeptidase N subunit 2-like Neighboring gene leucine rich repeat containing 15 Neighboring gene uncharacterized LOC110438742 Neighboring gene OPA1 mitochondrial dynamin like GTPase

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
hairy-related 6
Names
Hes1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131079.2NP_571154.2  hairy-related 6

    See identical proteins and their annotated locations for NP_571154.2

    Status: VALIDATED

    Source sequence(s)
    BX950188, EH450285, EH476089, EH579523, EH604098
    UniProtKB/TrEMBL
    Q6PBX3
    Related
    ENSDARP00000018393.8, ENSDART00000023613.9
    Conserved Domains (2) summary
    cd00083
    Location:3295
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam07527
    Location:110148
    Hairy_orange; Hairy Orange

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    36551083..36552768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394657.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    193858..195543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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