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Zdhhc9 zinc finger, DHHC-type containing 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 302808, updated on 18-Apr-2019

Summary

Official Symbol
Zdhhc9provided by RGD
Official Full Name
zinc finger, DHHC-type containing 9provided by RGD
Primary source
RGD:1561389
See related
Ensembl:ENSRNOG00000004581
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 138.1), Lung (RPKM 113.1) and 9 other tissues See more
Orthologs

Genomic context

See Zdhhc9 in Genome Data Viewer
Location:
Xq36
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (135005171..135041207, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) X NC_005120.3 (135081376..135116885, complement)

Chromosome X - NC_005120.4Genomic Context describing neighboring genes Neighboring gene X-prolyl aminopeptidase 2 Neighboring gene SAM and SH3 domain containing 3 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene UTP14A small subunit processome component

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
Ras palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
Ras palmitoyltransferase activity ISO
Inferred from Sequence Orthology
more info
PubMed 
palmitoyltransferase activity ISO
Inferred from Sequence Orthology
more info
PubMed 
protein-cysteine S-palmitoyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
peptidyl-L-cysteine S-palmitoylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
peptidyl-L-cysteine S-palmitoylation ISO
Inferred from Sequence Orthology
more info
PubMed 
protein palmitoylation ISO
Inferred from Sequence Orthology
more info
PubMed 
protein targeting to membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
PubMed 
cytosol IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
intrinsic component of Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
intrinsic component of Golgi membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 
palmitoyltransferase complex ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
palmitoyltransferase ZDHHC9
Names
membrane-associated DHHC9 zinc finger protein
zinc finger, DHHC domain containing 9
NP_001034105.2
XP_006257583.1
XP_017457503.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039016.2NP_001034105.2  palmitoyltransferase ZDHHC9

    See identical proteins and their annotated locations for NP_001034105.2

    Status: PROVISIONAL

    Source sequence(s)
    BC129070
    UniProtKB/TrEMBL
    A1L1I1
    Related
    ENSRNOP00000006484.5, ENSRNOT00000006484.6
    Conserved Domains (2) summary
    pfam01529
    Location:138261
    zf-DHHC; DHHC palmitoyltransferase
    pfam15721
    Location:284343
    ANXA2R; Annexin-2 receptor

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005120.4 Reference Rnor_6.0 Primary Assembly

    Range
    135005171..135041207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017602014.1XP_017457503.1  palmitoyltransferase ZDHHC9 isoform X1

    UniProtKB/TrEMBL
    Q2TGJ9
    Conserved Domains (2) summary
    pfam01529
    Location:138261
    zf-DHHC; DHHC palmitoyltransferase
    pfam15721
    Location:284343
    ANXA2R; Annexin-2 receptor
  2. XM_006257521.3XP_006257583.1  palmitoyltransferase ZDHHC9 isoform X1

    See identical proteins and their annotated locations for XP_006257583.1

    UniProtKB/TrEMBL
    Q2TGJ9
    Conserved Domains (2) summary
    pfam01529
    Location:138261
    zf-DHHC; DHHC palmitoyltransferase
    pfam15721
    Location:284343
    ANXA2R; Annexin-2 receptor

Alternate Rn_Celera

Genomic

  1. AC_000089.1 Alternate Rn_Celera

    Range
    126302789..126338662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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