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foxg1a forkhead box G1a [ Danio rerio (zebrafish) ]

Gene ID: 30274, updated on 5-Nov-2022

Summary

Official Symbol
foxg1aprovided by ZNC
Official Full Name
forkhead box G1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-990415-267
See related
Ensembl:ENSDARG00000070769 AllianceGenome:ZFIN:ZDB-GENE-990415-267
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
bf1; BF-1; foxg1; zgc:109850
Summary
Predicted to enable sequence-specific double-stranded DNA binding activity. Acts upstream of or within embryonic retina morphogenesis in camera-type eye; neuron differentiation; and nose development. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; immature eye; nervous system; neuroectoderm; and presumptive telencephalon. Orthologous to human FOXG1 (forkhead box G1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See foxg1a in Genome Data Viewer
Location:
chromosome: 17
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (29104157..29119470, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (29088483..29102500, complement)
103 previous assembly Zv9 (GCF_000002035.4) 17 NC_007128.5 (29165201..29178572, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108179771 Neighboring gene protein kinase D1 Neighboring gene si:dkey-28g23.3 Neighboring gene uncharacterized LOC101886722 Neighboring gene spectrin, beta, non-erythrocytic 5 Neighboring gene EH-domain containing 4

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables sequence-specific double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
forkhead box protein G1
Names
brain factor 1
forkhead box G1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131067.1NP_571142.1  forkhead box protein G1

    See identical proteins and their annotated locations for NP_571142.1

    Status: PROVISIONAL

    Source sequence(s)
    AF067204
    UniProtKB/TrEMBL
    O73862
    Related
    ENSDARP00000094979.2, ENSDART00000104204.4
    Conserved Domains (1) summary
    smart00339
    Location:113201
    FH; FORKHEAD

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    29104157..29119470 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158751.4XP_005158808.1  forkhead box protein G1 isoform X1

    See identical proteins and their annotated locations for XP_005158808.1

    UniProtKB/TrEMBL
    A0A8M2B5P9, Q568V0
    Conserved Domains (1) summary
    smart00339
    Location:113201
    FH; FORKHEAD