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tyr tyrosinase [ Danio rerio (zebrafish) ]

Gene ID: 30207, updated on 5-Sep-2021

Summary

Official Symbol
tyrprovided by ZNC
Official Full Name
tyrosinaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-991026-3
See related
Ensembl:ENSDARG00000039077
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
oc; sa; sd; ty; sandy; zgc:109705
Orthologs
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Genomic context

See tyr in Genome Data Viewer
Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (43799258..43818783)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (43776250..43795340)
103 previous assembly Zv9 (GCF_000002035.4) 15 NC_007126.5 (42572519..42591530)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene cathepsin C Neighboring gene glutamate receptor, metabotropic 5b Neighboring gene NADPH oxidase 4 Neighboring gene histone H3.v1-like Neighboring gene N-acetylated alpha-linked acidic dipeptidase 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables catechol oxidase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 
enables tyrosinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables tyrosinase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in melanosome membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
tyrosinase
Names
oca1
sdy
tyra

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131013.3NP_571088.3  tyrosinase precursor

    Status: VALIDATED

    Source sequence(s)
    CABZ01073031, CABZ01073032, FQ377957
    Related
    ENSDARP00000111575.2, ENSDART00000122238.3
    Conserved Domains (2) summary
    pfam00264
    Location:172405
    Tyrosinase; Common central domain of tyrosinase
    cl21504
    Location:89110
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    43799258..43818783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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