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twist1a twist family bHLH transcription factor 1a [ Danio rerio (zebrafish) ]

Gene ID: 30175, updated on 13-Jun-2021

Summary

Official Symbol
twist1aprovided by ZNC
Official Full Name
twist family bHLH transcription factor 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-000210-6
See related
Ensembl:ENSDARG00000030402
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
twis; twist; twist1; Twist1b; twist-1; wu:fd04c01; zgc:101115
Orthologs
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Genomic context

See twist1a in Genome Data Viewer
Location:
chromosome: 19
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (2229165..2231188, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (2397420..2399443, complement)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (2456985..2459008, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene sorting nexin 13 Neighboring gene histone deacetylase 9-B-like Neighboring gene Fer3 like bHLH transcription factor Neighboring gene integrin, beta 8

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_130984.2NP_571059.1  twist-related protein 1a

    See identical proteins and their annotated locations for NP_571059.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ351987
    UniProtKB/TrEMBL
    Q9PTE3
    Related
    ENSDARP00000043594.4, ENSDART00000043595.5
    Conserved Domains (1) summary
    pfam00010
    Location:78128
    HLH; Helix-loop-helix DNA-binding domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    2229165..2231188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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