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Sp110 SP110 nuclear body protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 301570, updated on 2-Oct-2018

Summary

Official Symbol
Sp110provided by RGD
Official Full Name
SP110 nuclear body proteinprovided by RGD
Primary source
RGD:1310173
See related
Ensembl:ENSRNOG00000033747
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 350.6), Thymus (RPKM 325.7) and 9 other tissues See more
Orthologs

Genomic context

See Sp110 in Genome Data Viewer
Location:
9q35
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (92593909..92618867, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 9 NC_005108.3 (92324921..92349627, complement)

Chromosome 9 - NC_005108.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102550706 Neighboring gene solute carrier family 16, member 14 Neighboring gene component of Sp100-rs Neighboring gene SP140 nuclear body protein Neighboring gene SP100 nuclear antigen Neighboring gene similar to Nuclear autoantigen Sp-100 (Speckled 100 kDa)

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC124651

Gene Ontology Provided by RGD

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
innate immune response IEA
Inferred from Electronic Annotation
more info
 
positive regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
response to bacterium ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
sp110 nuclear body protein
Names
intracellular pathogen resistance protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034137.1NP_001029309.1  sp110 nuclear body protein

    See identical proteins and their annotated locations for NP_001029309.1

    Status: PROVISIONAL

    Source sequence(s)
    BC105751
    UniProtKB/Swiss-Prot
    Q3KRF1
    Related
    ENSRNOP00000053828.4, ENSRNOT00000056995.4
    Conserved Domains (3) summary
    TIGR02223
    Location:213431
    ftsN; cell division protein FtsN
    pfam01342
    Location:390465
    SAND; SAND domain
    pfam03172
    Location:11105
    Sp100; Sp100 domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005108.4 Reference Rnor_6.0 Primary Assembly

    Range
    92593909..92618867 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006245370.3XP_006245432.1  sp110 nuclear body protein isoform X1

    Conserved Domains (3) summary
    pfam01342
    Location:336411
    SAND; SAND domain
    pfam03172
    Location:11105
    Sp100; Sp100 domain
    pfam17040
    Location:109342
    CBP_CCPA; Cellulose-complementing protein A
  2. XM_017596378.1XP_017451867.1  sp110 nuclear body protein isoform X2

Alternate Rn_Celera

Genomic

  1. AC_000077.1 Alternate Rn_Celera

    Range
    83624105..83646362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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