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Sumo1 small ubiquitin-like modifier 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 301442, updated on 5-Sep-2021

Summary

Official Symbol
Sumo1provided by RGD
Official Full Name
small ubiquitin-like modifier 1provided by RGD
Primary source
RGD:1306919
See related
Ensembl:ENSRNOG00000016133
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 171.9), Adrenal (RPKM 164.9) and 9 other tissues See more
Orthologs
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Genomic context

See Sumo1 in Genome Data Viewer
Location:
9q31
Exon count:
5
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (61078790..61108697, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (66453428..66483614, complement)

Chromosome 9 - NC_051344.1Genomic Context describing neighboring genes Neighboring gene frizzled class receptor 7 Neighboring gene similar to KIAA2012 protein Neighboring gene uncharacterized LOC120094800 Neighboring gene similar to SET protein (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A) (Template-activating factor I) (TAF-I) (Liver regeneration-related protein LRRGR00002) Neighboring gene small nucleolar RNA SNORA48 Neighboring gene NOP58 ribonucleoprotein

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC109561

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables enzyme binding ISO
Inferred from Sequence Orthology
more info
 
enables potassium channel regulator activity ISO
Inferred from Sequence Orthology
more info
 
enables potassium channel regulator activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein tag IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables small protein activating enzyme binding ISO
Inferred from Sequence Orthology
more info
 
enables ubiquitin protein ligase binding ISO
Inferred from Sequence Orthology
more info
 
enables ubiquitin protein ligase binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables ubiquitin-like protein ligase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ubiquitin-specific protease binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within PML body organization ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to cadmium ion ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to cadmium ion ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cellular response to heat ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to heat ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of DNA binding ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of DNA-binding transcription factor activity ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of action potential ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of action potential ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of delayed rectifier potassium channel activity ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of delayed rectifier potassium channel activity ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of protein import into nucleus ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of negative regulation of transcription by transcription factor localization ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of negative regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of ATPase-coupled calcium transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of protein-containing complex assembly ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within protein localization to nuclear pore ISO
Inferred from Sequence Orthology
more info
 
involved_in protein stabilization ISO
Inferred from Sequence Orthology
more info
 
involved_in protein sumoylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within protein sumoylation ISO
Inferred from Sequence Orthology
more info
 
involved_in protein sumoylation ISO
Inferred from Sequence Orthology
more info
 
involved_in protein sumoylation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of calcium ion transmembrane transport ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cardiac muscle cell contraction ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of protein stability ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
involved_in roof of mouth development ISO
Inferred from Sequence Orthology
more info
 
involved_in roof of mouth development ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
colocalizes_with PML body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
colocalizes_with PML body IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with PML body ISO
Inferred from Sequence Orthology
more info
 
located_in PML body ISO
Inferred from Sequence Orthology
more info
 
located_in PML body ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in XY body IDA
Inferred from Direct Assay
more info
PubMed 
located_in XY body ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in dendrite IDA
Inferred from Direct Assay
more info
PubMed 
located_in fibrillar center IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with heterochromatin IDA
Inferred from Direct Assay
more info
PubMed 
located_in nuclear body ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear membrane ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear stress granule ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear stress granule ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in synapse IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
small ubiquitin-related modifier 1
Names
SMT3 suppressor of mif two 3 homolog 1
SUMO-1
ubiquitin-like 1 (sentrin)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009672.1NP_001009672.1  small ubiquitin-related modifier 1

    See identical proteins and their annotated locations for NP_001009672.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088322
    UniProtKB/Swiss-Prot
    Q5I0H3
    Related
    ENSRNOP00000022048.5, ENSRNOT00000022047.5
    Conserved Domains (1) summary
    cd16114
    Location:2196
    Ubl_SUMO1; ubiquitin-like (Ubl) domain found in small ubiquitin-related modifier 1 (SUMO-1) and similar proteins

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051344.1 Reference mRatBN7.2 Primary Assembly

    Range
    61078790..61108697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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