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wnt4 wingless-type MMTV integration site family, member 4 [ Danio rerio (zebrafish) ]

Gene ID: 30123, updated on 31-May-2021

Summary

Official Symbol
wnt4provided by ZNC
Official Full Name
wingless-type MMTV integration site family, member 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-980526-352
See related
Ensembl:ENSDARG00000071208
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wnt; ZfWnt; wnt-4; wnt4a; zgc:136737
Orthologs
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Genomic context

See wnt4 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (39167846..39202915, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (38905892..38940961, complement)
103 previous assembly Zv9 (GCF_000002035.4) 11 NC_007122.5 (40401493..40436562, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108191630 Neighboring gene adaptor related protein complex 5 subunit beta 1 Neighboring gene cell division cycle 42 Neighboring gene uncharacterized LOC108191631 Neighboring gene calmodulin binding transcription activator 1b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC136737

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables cytokine activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables frizzled binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in canonical Wnt signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cell fate commitment IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within cell migration involved in gastrulation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within embryonic viscerocranium morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within embryonic viscerocranium morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within habenula development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within heart development IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
involved_in multicellular organism development IMP
Inferred from Mutant Phenotype
more info
 
involved_in neuron differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within positive regulation of transcription, DNA-templated IPI
Inferred from Physical Interaction
more info
PubMed 
acts_upstream_of_or_within regulation of axon extension involved in axon guidance IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within regulation of axon extension involved in axon guidance IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within sensory epithelium regeneration IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
protein Wnt-4a
Names
wingless-type MMTV integration site family, member 4a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040387.1NP_001035477.1  protein Wnt-4a precursor

    See identical proteins and their annotated locations for NP_001035477.1

    Status: PROVISIONAL

    Source sequence(s)
    BC115247
    UniProtKB/Swiss-Prot
    P47793
    UniProtKB/TrEMBL
    Q1RLW9
    Related
    ENSDARP00000095904.2, ENSDART00000105133.4
    Conserved Domains (1) summary
    smart00097
    Location:45352
    WNT1; found in Wnt-1

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    39167846..39202915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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