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Alg13 ALG13, UDP-N-acetylglucosaminyltransferase subunit [ Rattus norvegicus (Norway rat) ]

Gene ID: 300284, updated on 2-Oct-2018

Summary

Official Symbol
Alg13provided by RGD
Official Full Name
ALG13, UDP-N-acetylglucosaminyltransferase subunitprovided by RGD
Primary source
RGD:1359416
See related
Ensembl:ENSRNOG00000005753 Vega:OTTRNOG00000000400
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 77.6), Kidney (RPKM 69.5) and 9 other tissues See more

Genomic context

See Alg13 in Genome Data Viewer
Location:
Xq34
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (115561329..115589792)
104 previous assembly Rnor_5.0 (GCF_000001895.4) X NC_005120.3 (114015086..114036262)

Chromosome X - NC_005120.4Genomic Context describing neighboring genes Neighboring gene ribosomal protein S26-like Neighboring gene similar to 60S acidic ribosomal protein P0 (L10E) Neighboring gene putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 Neighboring gene transient receptor potential cation channel, subfamily C, member 5 Neighboring gene TRPC5 opposite strand Neighboring gene ribosome biogenesis protein NSA2 homolog pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

General protein information

Preferred Names
UDP-N-acetylglucosamine transferase subunit ALG13 homolog
Names
asparagine-linked glycosylation 13 homolog
glycosyltransferase 28 domain-containing protein 1
NP_001013973.1
XP_017457442.1
XP_017457443.1
XP_017457444.1
XP_017457445.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013951.1NP_001013973.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog

    See identical proteins and their annotated locations for NP_001013973.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088233
    UniProtKB/Swiss-Prot
    Q5I0K7
    Related
    ENSRNOP00000068463.1, OTTRNOP00000000286, ENSRNOT00000076680.2, OTTRNOT00000000568
    Conserved Domains (1) summary
    cl10013
    Location:5120
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005120.4 Reference Rnor_6.0 Primary Assembly

    Range
    115561329..115589792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017601953.1XP_017457442.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X1

    UniProtKB/TrEMBL
    A0A096MJN3
    Related
    ENSRNOP00000068197.1, OTTRNOP00000000289, ENSRNOT00000076521.1, OTTRNOT00000000571
  2. XM_017601954.1XP_017457443.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X2

  3. XM_017601955.1XP_017457444.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X3

    UniProtKB/TrEMBL
    A0A0A6YYD7
    Related
    ENSRNOP00000007969.5, OTTRNOP00000000290, ENSRNOT00000007968.7, OTTRNOT00000000572
  4. XM_017601956.1XP_017457445.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X3

    UniProtKB/TrEMBL
    A0A0A6YYD7

RNA

  1. XR_001842598.1 RNA Sequence

    Related
    ENSRNOT00000077034.2, OTTRNOT00000000569

Alternate Rn_Celera

Genomic

  1. AC_000089.1 Alternate Rn_Celera

    Range
    107272709..107280607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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