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Spats2 spermatogenesis associated, serine-rich 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 300221, updated on 13-Aug-2019

Summary

Official Symbol
Spats2provided by RGD
Official Full Name
spermatogenesis associated, serine-rich 2provided by RGD
Primary source
RGD:1304780
See related
Ensembl:ENSRNOG00000052307
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Testes (RPKM 74.7), Kidney (RPKM 63.3) and 9 other tissues See more
Orthologs

Genomic context

See Spats2 in Genome Data Viewer
Location:
7q36
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (140806729..140880109)
106 current Rn_Celera (GCF_000002265.2) 7 AC_000075.1 (126787529..126837008)
104 previous assembly Rnor_5.0 (GCF_000001895.4) X NC_005120.3 (115310573..115384244)

Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene complement C1q like 4 Neighboring gene DnaJ heat shock protein family (Hsp40) member C22 Neighboring gene potassium voltage-gated channel subfamily H member 3 Neighboring gene uncharacterized LOC103692979 Neighboring gene microspherule protein 1 Neighboring gene family with sequence similarity 186, member B

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
PubMed 
cytosol IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
spermatogenesis-associated serine-rich protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191614.1NP_001178543.1  spermatogenesis-associated serine-rich protein 2

    Status: INFERRED

    Source sequence(s)
    AABR07058867, AABR07058868, AABR07058869, AABR07058870
    UniProtKB/TrEMBL
    F1LX68
    Related
    ENSRNOP00000068829.1, ENSRNOT00000086179.1
    Conserved Domains (1) summary
    pfam07139
    Location:81384
    DUF1387; Protein of unknown function (DUF1387)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

    Range
    140806729..140880109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006257350.1XP_006257412.1  spermatogenesis-associated serine-rich protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006257412.1

    Conserved Domains (1) summary
    pfam07139
    Location:81384
    DUF1387; Protein of unknown function (DUF1387)
  2. XM_006257351.3XP_006257413.1  spermatogenesis-associated serine-rich protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006257413.1

    Conserved Domains (1) summary
    pfam07139
    Location:81384
    DUF1387; Protein of unknown function (DUF1387)
  3. XM_008765702.2XP_008763924.1  spermatogenesis-associated serine-rich protein 2 isoform X1

    See identical proteins and their annotated locations for XP_008763924.1

    Conserved Domains (1) summary
    pfam07139
    Location:81384
    DUF1387; Protein of unknown function (DUF1387)

Alternate Rn_Celera

Genomic

  1. AC_000075.1 Alternate Rn_Celera

    Range
    126787529..126837008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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