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Eef1d eukaryotic translation elongation factor 1 delta [ Rattus norvegicus (Norway rat) ]

Gene ID: 300033, updated on 8-Dec-2022

Summary

Official Symbol
Eef1dprovided by RGD
Official Full Name
eukaryotic translation elongation factor 1 deltaprovided by RGD
Primary source
RGD:621174
See related
Ensembl:ENSRNOG00000021638 AllianceGenome:RGD:621174
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable several functions, including DNA-binding transcription factor binding activity; guanyl-nucleotide exchange factor activity; and heat shock protein binding activity. Predicted to be involved in several processes, including cellular macromolecule biosynthetic process; cellular response to ionizing radiation; and positive regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to be located in cytoplasm; fibrillar center; and nucleoplasm. Predicted to be part of eukaryotic translation elongation factor 1 complex. Predicted to be active in cytosol and glutamatergic synapse. Predicted to colocalize with endoplasmic reticulum. Orthologous to human EEF1D (eukaryotic translation elongation factor 1 delta). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 250.4), Muscle (RPKM 240.1) and 9 other tissues See more
Orthologs
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Genomic context

See Eef1d in Genome Data Viewer
Location:
7q34
Exon count:
12
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (107581930..107596735, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (116928264..116942981, complement)

Chromosome 7 - NC_051342.1Genomic Context describing neighboring genes Neighboring gene maestro heat-like repeat family member 6 Neighboring gene nicotinate phosphoribosyltransferase Neighboring gene tigger transposable element derived 5 Neighboring gene pyrroline-5-carboxylate reductase 3 Neighboring gene GDP-L-fucose synthase

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables DNA-binding transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
enables guanyl-nucleotide exchange factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables heat shock protein binding ISO
Inferred from Sequence Orthology
more info
 
enables pyrroline-5-carboxylate reductase activity IEA
Inferred from Electronic Annotation
more info
 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in L-proline biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to ionizing radiation ISO
Inferred from Sequence Orthology
more info
 
involved_in mRNA transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of I-kappaB kinase/NF-kappaB signaling ISO
Inferred from Sequence Orthology
more info
PubMed 
involved_in regulation of cell death ISO
Inferred from Sequence Orthology
more info
 
involved_in translational elongation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
part_of eukaryotic translation elongation factor 1 complex IEA
Inferred from Electronic Annotation
more info
 
located_in fibrillar center ISO
Inferred from Sequence Orthology
more info
 
is_active_in glutamatergic synapse ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
NOT located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
is_active_in synapse ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
elongation factor 1-delta
Names
EF-1-delta
guanine nucleotide exchange protein
translation elongation factor 1-delta subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013104.1NP_001013122.1  elongation factor 1-delta

    See identical proteins and their annotated locations for NP_001013122.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079391
    UniProtKB/Swiss-Prot
    Q68FR9
    Conserved Domains (1) summary
    pfam00736
    Location:567650
    EF1_GNE; EF-1 guanine nucleotide exchange domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051342.1 Reference mRatBN7.2 Primary Assembly

    Range
    107581930..107596735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008765558.2XP_008763780.1  elongation factor 1-delta isoform X8

    See identical proteins and their annotated locations for XP_008763780.1

    UniProtKB/Swiss-Prot
    Q68FR9
    Conserved Domains (1) summary
    pfam00736
    Location:198281
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  2. XM_008765562.2XP_008763784.1  elongation factor 1-delta isoform X10

    See identical proteins and their annotated locations for XP_008763784.1

    UniProtKB/TrEMBL
    A0A8I6AQM3
    Conserved Domains (1) summary
    pfam00736
    Location:174257
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  3. XM_039078816.1XP_038934744.1  elongation factor 1-delta isoform X9

    UniProtKB/TrEMBL
    A0A8I5ZUU1
    Conserved Domains (1) summary
    pfam00736
    Location:193276
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  4. XM_017594766.2XP_017450255.1  elongation factor 1-delta isoform X7

    UniProtKB/TrEMBL
    A0A8I6GJH3
    Related
    ENSRNOP00000087171.1, ENSRNOT00000098616.1
  5. XM_039078819.1XP_038934747.1  elongation factor 1-delta isoform X10

    UniProtKB/TrEMBL
    A0A8I6AQM3
    Related
    ENSRNOP00000096307.1, ENSRNOT00000110570.1
    Conserved Domains (1) summary
    pfam00736
    Location:174257
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  6. XM_008765552.3XP_008763774.1  elongation factor 1-delta isoform X1

    See identical proteins and their annotated locations for XP_008763774.1

    UniProtKB/TrEMBL
    A0A8I5ZWY7
    Related
    ENSRNOP00000084037.1, ENSRNOT00000117537.1
    Conserved Domains (1) summary
    pfam00736
    Location:587670
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  7. XM_017594768.2XP_017450257.1  elongation factor 1-delta isoform X7

    UniProtKB/TrEMBL
    A0A8I6GJH3
  8. XM_008765561.2XP_008763783.1  elongation factor 1-delta isoform X10

    See identical proteins and their annotated locations for XP_008763783.1

    UniProtKB/TrEMBL
    A0A8I6AQM3
    Conserved Domains (1) summary
    pfam00736
    Location:174257
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  9. XM_039078815.1XP_038934743.1  elongation factor 1-delta isoform X9

    UniProtKB/TrEMBL
    A0A8I5ZUU1
    Conserved Domains (1) summary
    pfam00736
    Location:193276
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  10. XM_008765557.2XP_008763779.1  elongation factor 1-delta isoform X8

    See identical proteins and their annotated locations for XP_008763779.1

    UniProtKB/Swiss-Prot
    Q68FR9
    Conserved Domains (1) summary
    pfam00736
    Location:198281
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  11. XM_017594765.2XP_017450254.1  elongation factor 1-delta isoform X7

    UniProtKB/TrEMBL
    A0A8I6GJH3
  12. XM_039078814.1XP_038934742.1  elongation factor 1-delta isoform X6

    Conserved Domains (1) summary
    pfam00736
    Location:544627
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  13. XM_008765551.3XP_008763773.1  elongation factor 1-delta isoform X1

    See identical proteins and their annotated locations for XP_008763773.1

    UniProtKB/TrEMBL
    A0A8I5ZWY7
    Conserved Domains (1) summary
    pfam00736
    Location:587670
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  14. XM_017594769.2XP_017450258.1  elongation factor 1-delta isoform X10

    UniProtKB/TrEMBL
    A0A8I6AQM3
    Conserved Domains (1) summary
    pfam00736
    Location:174257
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  15. XM_008765559.2XP_008763781.1  elongation factor 1-delta isoform X8

    See identical proteins and their annotated locations for XP_008763781.1

    UniProtKB/Swiss-Prot
    Q68FR9
    Conserved Domains (1) summary
    pfam00736
    Location:198281
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  16. XM_039078818.1XP_038934746.1  elongation factor 1-delta isoform X10

    UniProtKB/TrEMBL
    A0A8I6AQM3
    Conserved Domains (1) summary
    pfam00736
    Location:174257
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  17. XM_039078817.1XP_038934745.1  elongation factor 1-delta isoform X9

    UniProtKB/TrEMBL
    A0A8I5ZUU1
    Related
    ENSRNOP00000081329.1, ENSRNOT00000111979.1
    Conserved Domains (1) summary
    pfam00736
    Location:193276
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  18. XM_017594767.2XP_017450256.1  elongation factor 1-delta isoform X7

    UniProtKB/TrEMBL
    A0A8I6GJH3
    Related
    ENSRNOP00000092090.1, ENSRNOT00000106771.1
  19. XM_039078812.1XP_038934740.1  elongation factor 1-delta isoform X4

    Conserved Domains (1) summary
    pfam00736
    Location:567650
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  20. XM_039078810.1XP_038934738.1  elongation factor 1-delta isoform X2

    Conserved Domains (1) summary
    pfam00736
    Location:586669
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  21. XM_039078813.1XP_038934741.1  elongation factor 1-delta isoform X5

    Conserved Domains (1) summary
    pfam00736
    Location:563646
    EF1_GNE; EF-1 guanine nucleotide exchange domain
  22. XM_039078811.1XP_038934739.1  elongation factor 1-delta isoform X3

    Related
    ENSRNOP00000034828.5, ENSRNOT00000029456.6
    Conserved Domains (1) summary
    pfam00736
    Location:568651
    EF1_GNE; EF-1 guanine nucleotide exchange domain