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A2MP1 alpha-2-macroglobulin pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 3, updated on 13-May-2022

Summary

Official Symbol
A2MP1provided by HGNC
Official Full Name
alpha-2-macroglobulin pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:8
See related
Ensembl:ENSG00000256069 AllianceGenome:HGNC:8
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
A2MP
Expression
Biased expression in adrenal (RPKM 1.1), spleen (RPKM 0.5) and 11 other tissues See more
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Genomic context

See A2MP1 in Genome Data Viewer
Location:
12p13.31
Exon count:
9
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (9228533..9234207, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (9211052..9216723, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (9381129..9386803, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene killer cell lectin like receptor G1 Neighboring gene BTG anti-proliferation factor 1 pseudogene 1 Neighboring gene PZP alpha-2-macroglobulin like Neighboring gene TPT1 pseudogene 12 Neighboring gene pregnancy zone protein-like Neighboring gene microRNA 1244-3 Neighboring gene long intergenic non-protein coding RNA 987 Neighboring gene prothymosin alpha pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genetic variants associated with breast size also influence breast cancer risk.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040112.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010175, DB301195, DV080209, DV080210, DY655604
    Related
    ENST00000543404.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    9228533..9234207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    9211052..9216723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001067.2: Suppressed sequence

    Description
    NG_001067.2: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.