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PKN3 protein kinase N3 [ Homo sapiens (human) ]

Gene ID: 29941, updated on 25-Nov-2021

Summary

Official Symbol
PKN3provided by HGNC
Official Full Name
protein kinase N3provided by HGNC
Primary source
HGNC:HGNC:17999
See related
Ensembl:ENSG00000160447 MIM:610714
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
UTDP4-1
Expression
Ubiquitous expression in fat (RPKM 3.9), lung (RPKM 3.1) and 25 other tissues See more
Orthologs
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Genomic context

See PKN3 in Genome Data Viewer
Location:
9q34.11
Exon count:
23
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (128702497..128720918)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (131464782..131483195)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376287 Neighboring gene high mobility group AT-hook 1 pseudogene 4 Neighboring gene SET nuclear proto-oncogene Neighboring gene RNA, 7SL, cytoplasmic 560, pseudogene Neighboring gene ZDHHC12 divergent transcript Neighboring gene zinc finger DHHC-type palmitoyltransferase 12 Neighboring gene zyg-11 related cell cycle regulator Neighboring gene CRISPRi-validated cis-regulatory element chr9.3033

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Genetic variants associated with disordered eating.
GeneReviews: Not available
Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.
GeneReviews: Not available
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables calcium-dependent protein kinase C activity IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase activity TAS
Traceable Author Statement
more info
PubMed 
enables protein serine kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein serine/threonine/tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in epithelial cell migration IDA
Inferred from Direct Assay
more info
PubMed 
involved_in intracellular signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in peptidyl-serine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein phosphorylation TAS
Traceable Author Statement
more info
PubMed 
involved_in signal transduction TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus TAS
Traceable Author Statement
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
serine/threonine-protein kinase N3
Names
protein kinase PKN-beta
protein-kinase C-related kinase 3
NP_001304855.1
NP_037487.2
XP_005252003.1
XP_006717143.1
XP_016870138.1
XP_016870139.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001317926.2NP_001304855.1  serine/threonine-protein kinase N3 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the penultimate exon, compared to variant 1, resulting in a novel 3' coding region and shorter 3' UTR. It encodes isoform 2 which is shorter and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AL441992
    Conserved Domains (6) summary
    cd11622
    Location:1378
    HR1_PKN_1; First Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N
    cd11632
    Location:97170
    HR1_PKN3_2; Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N3
    smart00220
    Location:559811
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cl00087
    Location:170230
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl14603
    Location:328410
    C2; C2 domain
    cl21453
    Location:559815
    PKc_like; Protein Kinases, catalytic domain
  2. NM_013355.5NP_037487.2  serine/threonine-protein kinase N3 isoform 1

    See identical proteins and their annotated locations for NP_037487.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL441992
    Consensus CDS
    CCDS6908.1
    UniProtKB/Swiss-Prot
    Q6P5Z2
    UniProtKB/TrEMBL
    A0A024R8D6
    Related
    ENSP00000291906.4, ENST00000291906.5
    Conserved Domains (6) summary
    PTZ00263
    Location:555879
    PTZ00263; protein kinase A catalytic subunit; Provisional
    cd11622
    Location:1378
    HR1_PKN_1; First Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N
    cd11632
    Location:97170
    HR1_PKN3_2; Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N3
    cd05589
    Location:559884
    STKc_PKN; Catalytic domain of the Serine/Threonine Kinase, Protein Kinase N
    cl00087
    Location:170230
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl14603
    Location:328410
    C2; C2 domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    128702497..128720918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017014650.1XP_016870139.1  serine/threonine-protein kinase N3 isoform X4

  2. XM_017014649.2XP_016870138.1  serine/threonine-protein kinase N3 isoform X3

  3. XM_006717080.3XP_006717143.1  serine/threonine-protein kinase N3 isoform X1

    Conserved Domains (6) summary
    cd11622
    Location:2085
    HR1_PKN_1; First Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N
    cd11632
    Location:104177
    HR1_PKN3_2; Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N3
    smart00220
    Location:566825
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd05589
    Location:566891
    STKc_PKN; Catalytic domain of the Serine/Threonine Kinase, Protein Kinase N
    cl00087
    Location:177237
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl14603
    Location:335417
    C2; C2 domain
  4. XM_005251946.3XP_005252003.1  serine/threonine-protein kinase N3 isoform X2

    Conserved Domains (6) summary
    PTZ00263
    Location:552876
    PTZ00263; protein kinase A catalytic subunit; Provisional
    cd11622
    Location:1075
    HR1_PKN_1; First Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N
    cd11632
    Location:94167
    HR1_PKN3_2; Second Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N3
    cl00087
    Location:167227
    HR1; Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases
    cl14603
    Location:325407
    C2; C2 domain
    cl21453
    Location:556881
    PKc_like; Protein Kinases, catalytic domain
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