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Osr1 odd-skipped related transcription factor 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298878, updated on 18-Apr-2019

Summary

Official Symbol
Osr1provided by RGD
Official Full Name
odd-skipped related transcription factor 1provided by RGD
Primary source
RGD:1311807
See related
Ensembl:ENSRNOG00000004210
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Odd1
Expression
Biased expression in Muscle (RPKM 31.2), Heart (RPKM 24.3) and 8 other tissues See more
Orthologs

Genomic context

See Osr1 in Genome Data Viewer
Location:
6q14
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (35314431..35321458)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 6 NC_005105.3 (45074989..45086319)

Chromosome 6 - NC_005105.4Genomic Context describing neighboring genes Neighboring gene hypothetical protein LOC689716 Neighboring gene uncharacterized LOC103692597 Neighboring gene uncharacterized LOC108351357 Neighboring gene 60S ribosomal protein L38-like Neighboring gene 5'-nucleotidase, cytosolic IB

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
RNA polymerase II regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cell differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
cell proliferation involved in kidney development ISO
Inferred from Sequence Orthology
more info
PubMed 
cell proliferation involved in kidney development ISS
Inferred from Sequence or Structural Similarity
more info
 
cellular response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 
cellular response to retinoic acid ISO
Inferred from Sequence Orthology
more info
PubMed 
chondrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 
chondrocyte differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
embryonic digit morphogenesis IEA
Inferred from Electronic Annotation
more info
 
embryonic digit morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
embryonic forelimb morphogenesis IEA
Inferred from Electronic Annotation
more info
 
embryonic forelimb morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
embryonic hindlimb morphogenesis IEA
Inferred from Electronic Annotation
more info
 
embryonic hindlimb morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
embryonic skeletal joint development ISO
Inferred from Sequence Orthology
more info
PubMed 
embryonic skeletal joint morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
embryonic skeletal limb joint morphogenesis IEA
Inferred from Electronic Annotation
more info
 
embryonic skeletal limb joint morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
gonad development IEA
Inferred from Electronic Annotation
more info
 
gonad development ISO
Inferred from Sequence Orthology
more info
PubMed 
heart development ISO
Inferred from Sequence Orthology
more info
PubMed 
heart development ISS
Inferred from Sequence or Structural Similarity
more info
 
intermediate mesoderm development IEA
Inferred from Electronic Annotation
more info
 
intermediate mesoderm development ISO
Inferred from Sequence Orthology
more info
PubMed 
mesangial cell development ISO
Inferred from Sequence Orthology
more info
PubMed 
mesangial cell development ISS
Inferred from Sequence or Structural Similarity
more info
 
mesonephric duct morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
mesonephric duct morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
mesonephros development ISO
Inferred from Sequence Orthology
more info
PubMed 
mesonephros development ISS
Inferred from Sequence or Structural Similarity
more info
 
metanephric cap mesenchymal cell proliferation involved in metanephros development ISO
Inferred from Sequence Orthology
more info
PubMed 
metanephric cap mesenchymal cell proliferation involved in metanephros development ISS
Inferred from Sequence or Structural Similarity
more info
 
metanephric epithelium development ISO
Inferred from Sequence Orthology
more info
PubMed 
metanephric epithelium development ISS
Inferred from Sequence or Structural Similarity
more info
 
metanephric glomerulus vasculature development ISO
Inferred from Sequence Orthology
more info
PubMed 
metanephric glomerulus vasculature development ISS
Inferred from Sequence or Structural Similarity
more info
 
metanephric interstitial fibroblast development ISO
Inferred from Sequence Orthology
more info
PubMed 
metanephric interstitial fibroblast development ISS
Inferred from Sequence or Structural Similarity
more info
 
metanephric mesenchymal cell differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
metanephric mesenchymal cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
metanephric mesenchyme development ISO
Inferred from Sequence Orthology
more info
PubMed 
metanephric mesenchyme development ISS
Inferred from Sequence or Structural Similarity
more info
 
metanephric mesenchyme morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
metanephric mesenchyme morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
metanephric nephron tubule development ISO
Inferred from Sequence Orthology
more info
PubMed 
metanephric nephron tubule development ISS
Inferred from Sequence or Structural Similarity
more info
 
metanephric smooth muscle tissue development ISO
Inferred from Sequence Orthology
more info
PubMed 
metanephric smooth muscle tissue development ISS
Inferred from Sequence or Structural Similarity
more info
 
metanephros development ISO
Inferred from Sequence Orthology
more info
PubMed 
middle ear morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
middle ear morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
PubMed 
negative regulation of apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of creatine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
negative regulation of creatine transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
PubMed 
negative regulation of epithelial cell differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
negative regulation of epithelial cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of nephron tubule epithelial cell differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
negative regulation of nephron tubule epithelial cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of sodium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
negative regulation of sodium ion transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
PubMed 
negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
PubMed 
odontogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
odontogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
pattern specification involved in metanephros development ISO
Inferred from Sequence Orthology
more info
PubMed 
pattern specification involved in metanephros development ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of bone mineralization IEA
Inferred from Electronic Annotation
more info
 
positive regulation of bone mineralization ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of epithelial cell proliferation ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of epithelial cell proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of gastrulation ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of gastrulation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of gene expression ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
PubMed 
posterior mesonephric tubule development ISO
Inferred from Sequence Orthology
more info
PubMed 
posterior mesonephric tubule development ISS
Inferred from Sequence or Structural Similarity
more info
 
pronephros development ISO
Inferred from Sequence Orthology
more info
PubMed 
pronephros development ISS
Inferred from Sequence or Structural Similarity
more info
 
renal vesicle progenitor cell differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
renal vesicle progenitor cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
roof of mouth development ISO
Inferred from Sequence Orthology
more info
PubMed 
roof of mouth development ISS
Inferred from Sequence or Structural Similarity
more info
 
specification of anterior mesonephric tubule identity ISO
Inferred from Sequence Orthology
more info
PubMed 
specification of anterior mesonephric tubule identity ISS
Inferred from Sequence or Structural Similarity
more info
 
specification of posterior mesonephric tubule identity ISO
Inferred from Sequence Orthology
more info
PubMed 
specification of posterior mesonephric tubule identity ISS
Inferred from Sequence or Structural Similarity
more info
 
stem cell differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
stem cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
ureter urothelium development ISO
Inferred from Sequence Orthology
more info
PubMed 
ureter urothelium development ISS
Inferred from Sequence or Structural Similarity
more info
 
ureteric bud development ISO
Inferred from Sequence Orthology
more info
PubMed 
ureteric bud development ISS
Inferred from Sequence or Structural Similarity
more info
 
urogenital system development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
urogenital system development ISO
Inferred from Sequence Orthology
more info
PubMed 
urogenital system development ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
extrinsic component of membrane IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
protein odd-skipped-related 1
Names
odd-skipped related 1
odd-skipped related transciption factor 1
NP_001100186.1
XP_006239948.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106716.2NP_001100186.1  protein odd-skipped-related 1

    See identical proteins and their annotated locations for NP_001100186.1

    Status: PROVISIONAL

    Source sequence(s)
    BC159410
    UniProtKB/Swiss-Prot
    B0K011
    Conserved Domains (3) summary
    sd00017
    Location:177197
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:175197
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:217240
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005105.4 Reference Rnor_6.0 Primary Assembly

    Range
    35314431..35321458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006239886.2XP_006239948.1  protein odd-skipped-related 1 isoform X1

    See identical proteins and their annotated locations for XP_006239948.1

    UniProtKB/Swiss-Prot
    B0K011
    Related
    ENSRNOP00000005666.4, ENSRNOT00000005666.6
    Conserved Domains (3) summary
    sd00017
    Location:177197
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:175197
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:217240
    zf-H2C2_2; Zinc-finger double domain

Alternate Rn_Celera

Genomic

  1. AC_000074.1 Alternate Rn_Celera

    Range
    31814629..31816988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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