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Agtrap angiotensin II receptor-associated protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 298646, updated on 21-Jul-2020

Summary

Official Symbol
Agtrapprovided by RGD
Official Full Name
angiotensin II receptor-associated proteinprovided by RGD
Primary source
RGD:1359346
See related
Ensembl:ENSRNOG00000008619
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Kidney (RPKM 115.0), Adrenal (RPKM 29.2) and 9 other tissues See more
Orthologs

Genomic context

See Agtrap in Genome Data Viewer
Location:
5q36
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (164888069..164898387, complement)
106 current Rn_Celera (GCF_000002265.2) 5 AC_000073.1 (156788514..156798832, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (168546202..168556520, complement)

Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene NHP2-like protein 1-like Neighboring gene uncharacterized LOC102551309 Neighboring gene uncharacterized LOC102551534 Neighboring gene uncharacterized LOC102551596

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC95145

Gene Ontology Provided by RGD

Function Evidence Code Pubs
angiotensin type II receptor activity ISO
Inferred from Sequence Orthology
more info
 
identical protein binding ISO
Inferred from Sequence Orthology
more info
 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
angiotensin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
regulation of blood pressure IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of blood pressure ISO
Inferred from Sequence Orthology
more info
 
response to hypoxia IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
cell cortex ISO
Inferred from Sequence Orthology
more info
 
cellular_component ND
No biological Data available
more info
 
cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
cytosol IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
type-1 angiotensin II receptor-associated protein
Names
AT1 receptor-associated protein
angiotensin II, type I receptor-associated protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007654.1NP_001007655.1  type-1 angiotensin II receptor-associated protein

    See identical proteins and their annotated locations for NP_001007655.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082019
    UniProtKB/Swiss-Prot
    Q642A2
    Related
    ENSRNOP00000011747.3, ENSRNOT00000011747.6
    Conserved Domains (1) summary
    smart00805
    Location:1160
    AGTRAP; Angiotensin II, type I receptor-associated protein

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

    Range
    164888069..164898387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000073.1 Alternate Rn_Celera

    Range
    156788514..156798832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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