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Ninj2 ninjurin 2 [ Mus musculus (house mouse) ]

Gene ID: 29862, updated on 21-Apr-2024

Summary

Official Symbol
Ninj2provided by MGI
Official Full Name
ninjurin 2provided by MGI
Primary source
MGI:MGI:1352751
See related
Ensembl:ENSMUSG00000041377 AllianceGenome:MGI:1352751
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NINJ2 (ninjurin 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in ovary adult (RPKM 1.9), cerebellum adult (RPKM 1.1) and 4 other tissues See more
Orthologs
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Genomic context

Location:
6 F1; 6 56.9 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (120070315..120177300)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (120093380..120200531)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene RAD52 homolog, DNA repair protein Neighboring gene WNK lysine deficient protein kinase 1 Neighboring gene STARR-seq mESC enhancer starr_17155 Neighboring gene STARR-seq mESC enhancer starr_17156 Neighboring gene STARR-positive B cell enhancer mm9_chr6:119988697-119988998 Neighboring gene STARR-positive B cell enhancer ABC_E1708 Neighboring gene microRNA 706 Neighboring gene STARR-positive B cell enhancer ABC_E8832 Neighboring gene STARR-positive B cell enhancer ABC_E11333 Neighboring gene STARR-positive B cell enhancer mm9_chr6:120061967-120062268 Neighboring gene STARR-positive B cell enhancer mm9_chr6:120062467-120062768 Neighboring gene STARR-seq mESC enhancer starr_17160 Neighboring gene STARR-positive B cell enhancer ABC_E2801 Neighboring gene STARR-positive B cell enhancer ABC_E2802 Neighboring gene STARR-positive B cell enhancer ABC_E10405 Neighboring gene predicted gene, 25327 Neighboring gene STARR-seq mESC enhancer starr_17164 Neighboring gene STARR-positive B cell enhancer ABC_E6477 Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 3 Neighboring gene STARR-seq mESC enhancer starr_17178 Neighboring gene STARR-seq mESC enhancer starr_17179 Neighboring gene STARR-seq mESC enhancer starr_17181 Neighboring gene STARR-positive B cell enhancer ABC_E3675 Neighboring gene STARR-positive B cell enhancer ABC_E11334 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:120314296-120314483 Neighboring gene coiled-coil domain containing 77 Neighboring gene lysine demethylase 5A

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (2)  1 citation
  • Endonuclease-mediated (1) 

General gene information

Markers

Clone Names

  • MGC143502

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in tissue regeneration IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ninjurin-2
Names
nerve injury-induced protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347432.2NP_001334361.1  ninjurin-2 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding region, compared to variant 1. These differences cause translation initiation at a downstream AUG and results in an isoform (2) with a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AC156951
    Consensus CDS
    CCDS85148.1
    UniProtKB/TrEMBL
    F8WIJ3
    Related
    ENSMUSP00000046306.6, ENSMUST00000035244.6
  2. NM_016718.3NP_057927.1  ninjurin-2 isoform 1

    See identical proteins and their annotated locations for NP_057927.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC113092, AC156951
    Consensus CDS
    CCDS39612.1
    UniProtKB/Swiss-Prot
    Q9JL89
    UniProtKB/TrEMBL
    Q3TQA7
    Related
    ENSMUSP00000108331.3, ENSMUST00000112711.9
    Conserved Domains (1) summary
    pfam04923
    Location:26126
    Ninjurin; Ninjurin

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    120070315..120177300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036166209.1XP_036022102.1  ninjurin-2 isoform X1

    Conserved Domains (1) summary
    pfam04923
    Location:11111
    Ninjurin
  2. XM_006506224.5XP_006506287.1  ninjurin-2 isoform X1

    See identical proteins and their annotated locations for XP_006506287.1

    Conserved Domains (1) summary
    pfam04923
    Location:11111
    Ninjurin
  3. XM_006506223.5XP_006506286.1  ninjurin-2 isoform X1

    See identical proteins and their annotated locations for XP_006506286.1

    Conserved Domains (1) summary
    pfam04923
    Location:11111
    Ninjurin