Format

Send to:

Choose Destination

Cldn19 claudin 19 [ Rattus norvegicus (Norway rat) ]

Gene ID: 298487, updated on 30-Sep-2021

Summary

Official Symbol
Cldn19provided by RGD
Official Full Name
claudin 19provided by RGD
Primary source
RGD:1305000
See related
EnsemblRapid:ENSRNOG00000007922
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
claudin-19
Expression
Biased expression in Kidney (RPKM 62.4), Muscle (RPKM 16.5) and 5 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Cldn19 in Genome Data Viewer
Location:
5q36
Exon count:
5
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (132862939..132870364)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (138300692..138307982)

Chromosome 5 - NC_051340.1Genomic Context describing neighboring genes Neighboring gene similar to chromosome 1 open reading frame 50 Neighboring gene prolyl 3-hydroxylase 1 Neighboring gene Y box binding protein 1 Neighboring gene peptidylprolyl isomerase H

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in apical junction complex ISO
Inferred from Sequence Orthology
more info
 
located_in basolateral plasma membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in bicellular tight junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in bicellular tight junction ISO
Inferred from Sequence Orthology
more info
 
located_in cell junction ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008514.1NP_001008514.1  claudin-19

    See identical proteins and their annotated locations for NP_001008514.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079172
    UniProtKB/Swiss-Prot
    Q5QT56
    Related
    ENSRNOP00000080206.1, ENSRNOT00000113733.1
    Conserved Domains (1) summary
    cl21598
    Location:4182
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051340.1 Reference mRatBN7.2 Primary Assembly

    Range
    132862939..132870364
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006238756.4XP_006238818.1  claudin-19 isoform X1

    See identical proteins and their annotated locations for XP_006238818.1

    UniProtKB/Swiss-Prot
    Q5QT56
    Related
    ENSRNOP00000050261.1, ENSRNOT00000047151.3
    Conserved Domains (1) summary
    cl21598
    Location:4182
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Support Center