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C2orf27A chromosome 2 open reading frame 27A [ Homo sapiens (human) ]

Gene ID: 29798, updated on 23-Nov-2021

Summary

Official Symbol
C2orf27Aprovided by HGNC
Official Full Name
chromosome 2 open reading frame 27Aprovided by HGNC
Primary source
HGNC:HGNC:25077
See related
Ensembl:ENSG00000287151
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C2orf27; C2orf27B
Expression
Broad expression in brain (RPKM 3.1), testis (RPKM 3.1) and 23 other tissues See more
Orthologs
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Genomic context

See C2orf27A in Genome Data Viewer
Location:
2q21.1-q21.2
Exon count:
13
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (131682499..131767404)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (132440072..132524977)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1087 Neighboring gene GRAM domain containing 4 pseudogene 8 Neighboring gene CRISPRi-validated cis-regulatory element chr2.4815 Neighboring gene TOMM40 pseudogene 4 Neighboring gene neurobeachin pseudogene 2 Neighboring gene uncharacterized LOC100419921 Neighboring gene CDRT15 pseudogene 4 Neighboring gene CDRT15 pseudogene 3 Neighboring gene apical junction component 1 homolog pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • uncharacterized protein C2orf27
  • uncharacterized protein C2orf27A

Clone Names

  • MGC138394, DKFZp686A02119

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149013.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838
  2. NR_149014.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838
    Related
    ENST00000653458.1
  3. NR_149015.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838
  4. NR_149016.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838
  5. NR_167887.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838
  6. NR_167888.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838
    Related
    ENST00000657415.1
  7. NR_167889.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093724, AC093838

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    131682499..131767404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187528.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    1..71290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001354871.2: Suppressed sequence

    Description
    NM_001354871.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_001354872.2: Suppressed sequence

    Description
    NM_001354872.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_013310.5: Suppressed sequence

    Description
    NM_013310.5: This RefSeq was removed because it is now thought that this gene does not encode a protein.
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