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POM121L9P POM121 transmembrane nucleoporin like 9, pseudogene [ Homo sapiens (human) ]

Gene ID: 29774, updated on 25-Oct-2022

Summary

Official Symbol
POM121L9Pprovided by HGNC
Official Full Name
POM121 transmembrane nucleoporin like 9, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:30080
See related
Ensembl:ENSG00000290696 AllianceGenome:HGNC:30080
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
UNQ2565; DKFZP434P211
Summary
This locus is inferred to be a transcribed pseudogene based on the observation that protein homology is limited to the first of seven exons (indicated by alignment of AL117401.1 to the assembled human genome). This pattern suggests rapid turnover by the nonsense-mediated decay pathway. [provided by RefSeq, Jul 2008]
Expression
Biased expression in testis (RPKM 40.8) and gall bladder (RPKM 1.3) See more
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Genomic context

See POM121L9P in Genome Data Viewer
Location:
22q11.23
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (24251621..24265524)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (24713232..24727135)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (24647589..24661492)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene gamma-glutamyltransferase 5 Neighboring gene SPECC1L-ADORA2A readthrough (NMD candidate) Neighboring gene gamma-glutamyltransferase light chain 4 pseudogene Neighboring gene BCR pseudogene 1 Neighboring gene ribosomal protein S10 pseudogene 29 Neighboring gene sperm antigen with calponin homology and coiled-coil domains 1 like Neighboring gene uncharacterized LOC105372960

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • POM121 membrane glycoprotein-like 1 pseudogene
  • POM121 membrane glycoprotein-like 9, pseudogene
  • POM121-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003714.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL040062, AL045566, AL117401, AL117484, AP000354, AY358961, BX107726, DB072014
    Related
    ENST00000414583.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    24251621..24265524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    24713232..24727135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_014549.1: Suppressed sequence

    Description
    NM_014549.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.