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Zfp212 Zinc finger protein 212 [ Rattus norvegicus (Norway rat) ]

Gene ID: 297066, updated on 12-Jan-2022

Summary

Official Symbol
Zfp212provided by RGD
Official Full Name
Zinc finger protein 212provided by RGD
Primary source
RGD:1307836
See related
Ensembl:ENSRNOG00000006711
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Orthologous to human ZNF212 (zinc finger protein 212). [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in Thymus (RPKM 120.9), Lung (RPKM 84.1) and 9 other tissues See more
Orthologs
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Genomic context

See Zfp212 in Genome Data Viewer
Location:
4q24
Exon count:
6
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (76923638..76936076)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (77591880..77604307)

Chromosome 4 - NC_051339.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 398 Neighboring gene zinc finger protein 282 Neighboring gene ATP synthase subunit delta, mitochondrial pseudogene Neighboring gene zinc finger protein 956 Neighboring gene transfer RNA cysteine (anticodon GCA)

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001100839.1NP_001094309.1  zinc finger protein 212

    Status: VALIDATED

    Source sequence(s)
    JACYVU010000142

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051339.1 Reference mRatBN7.2 Primary Assembly

    Range
    76923638..76936076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006236446.4XP_006236508.1  zinc finger protein 212 isoform X2

    See identical proteins and their annotated locations for XP_006236508.1

    Related
    ENSRNOP00000009054.6, ENSRNOT00000009054.8
    Conserved Domains (5) summary
    cd07765
    Location:142180
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:318473
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:367387
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:425445
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:437462
    zf-H2C2_2; Zinc-finger double domain
  2. XM_006236445.4XP_006236507.1  zinc finger protein 212 isoform X1

    UniProtKB/TrEMBL
    G3V6U6
    Conserved Domains (5) summary
    cd07765
    Location:142180
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:329474
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:368388
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:426446
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:438463
    zf-H2C2_2; Zinc-finger double domain
  3. XM_039108653.1XP_038964581.1  zinc finger protein 212 isoform X3

    Conserved Domains (4) summary
    cd07765
    Location:88126
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:275420
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:314334
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:372392
    zf-C2H2; Zinc finger, C2H2 type
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