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Slc25a40 solute carrier family 25, member 40 [ Rattus norvegicus (Norway rat) ]

Gene ID: 296813, updated on 2-Oct-2018

Summary

Official Symbol
Slc25a40provided by RGD
Official Full Name
solute carrier family 25, member 40provided by RGD
Primary source
RGD:1308774
See related
Ensembl:ENSRNOG00000022837
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308774
Annotation information
Annotation category: suggests misassembly
Annotation category: partial on reference assembly
Expression
Biased expression in Thymus (RPKM 67.5), Kidney (RPKM 66.1) and 9 other tissues See more
Orthologs

Genomic context

See Slc25a40 in Genome Data Viewer
Location:
4q12
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (22619700..22661685, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 4 NC_005103.3 (22551248..22593670, complement)

Chromosome 4 - NC_005103.4Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, subfamily B (MDR/TAP), member 1B Neighboring gene ATP binding cassette subfamily B member 1A Neighboring gene RUN domain containing 3B Neighboring gene protein DBF4 homolog A-like Neighboring gene disintegrin and metalloproteinase domain-containing protein 22-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC112631

Gene Ontology Provided by RGD

Function Evidence Code Pubs
transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
solute carrier family 25 member 40

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037186.1NP_001032263.1  solute carrier family 25 member 40

    See identical proteins and their annotated locations for NP_001032263.1

    Status: PROVISIONAL

    Source sequence(s)
    BC100071
    UniProtKB/Swiss-Prot
    Q498U3
    Related
    ENSRNOP00000058058.3, ENSRNOT00000061342.5
    Conserved Domains (1) summary
    pfam00153
    Location:13137
    Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005103.4 Reference Rnor_6.0 Primary Assembly

    Range
    22619700..22661685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000072.1 Alternate Rn_Celera

    Range
    21105789..21162433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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