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Cisd2 CDGSH iron sulfur domain 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 295457, updated on 21-Jul-2018

Summary

Official Symbol
Cisd2provided by RGD
Official Full Name
CDGSH iron sulfur domain 2provided by RGD
Primary source
RGD:1566242
See related
Ensembl:ENSRNOG00000048258
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1566242
Expression
Biased expression in Kidney (RPKM 173.6), Brain (RPKM 165.7) and 9 other tissues See more
Orthologs

Genomic context

See Cisd2 in Genome Data Viewer
Location:
2q43
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (240586754..240611560, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 2 NC_005101.3 (259106753..259130712, complement)

Chromosome 2 - NC_005101.4Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member B2 Neighboring gene solute carrier family 9 member B1 Neighboring gene uncharacterized LOC100912622 Neighboring gene ubiquitin-conjugating enzyme E2D 3 Neighboring gene mannosidase beta

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
2 iron, 2 sulfur cluster binding ISO
Inferred from Sequence Orthology
more info
 
molecular_function ND
No biological Data available
more info
 
protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 
protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 
autophagy of mitochondrion ISO
Inferred from Sequence Orthology
more info
 
biological_process ND
No biological Data available
more info
 
multicellular organism aging IEA
Inferred from Electronic Annotation
more info
 
multicellular organism aging ISO
Inferred from Sequence Orthology
more info
 
regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 
regulation of autophagy ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial outer membrane ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex IEA
Inferred from Electronic Annotation
more info
 
protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
CDGSH iron-sulfur domain-containing protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191608.1NP_001178537.1  CDGSH iron-sulfur domain-containing protein 2

    See identical proteins and their annotated locations for NP_001178537.1

    Status: PROVISIONAL

    Source sequence(s)
    AC120718
    UniProtKB/TrEMBL
    D4AAE9
    Related
    ENSRNOP00000066613.1, ENSRNOT00000074632.1
    Conserved Domains (2) summary
    smart00704
    Location:81119
    ZnF_CDGSH; CDGSH-type zinc finger. Function unknown
    pfam10660
    Location:366
    MitoNEET_N; Iron-containing outer mitochondrial membrane protein N-terminus

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005101.4 Reference Rnor_6.0 Primary Assembly

    Range
    240586754..240611560 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000070.1 Alternate Rn_Celera

    Range
    216041027..216061932 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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