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Mrpl47 mitochondrial ribosomal protein L47 [ Rattus norvegicus (Norway rat) ]

Gene ID: 294963, updated on 19-Apr-2019

Summary

Official Symbol
Mrpl47provided by RGD
Official Full Name
mitochondrial ribosomal protein L47provided by RGD
Primary source
RGD:1307531
See related
Ensembl:ENSRNOG00000011639
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Heart (RPKM 179.6), Muscle (RPKM 147.3) and 9 other tissues See more
Orthologs

Genomic context

See Mrpl47 in Genome Data Viewer
Location:
2q24
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (119128311..119139451, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 2 NC_005101.3 (138779648..138790788, complement)

Chromosome 2 - NC_005101.4Genomic Context describing neighboring genes Neighboring gene guanine nucleotide-binding protein subunit beta-4-like Neighboring gene G protein subunit beta 4 Neighboring gene uncharacterized LOC102546477 Neighboring gene actin-like 6A Neighboring gene NADH:ubiquinone oxidoreductase subunit B5 Neighboring gene ubiquitin specific peptidase 13

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

General gene information

Markers

Homology

Clone Names

  • MGC125055

Gene Ontology Provided by RGD

Function Evidence Code Pubs
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
mitochondrial translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
mitochondrial large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
39S ribosomal protein L47, mitochondrial

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037183.1NP_001032260.1  39S ribosomal protein L47, mitochondrial

    See identical proteins and their annotated locations for NP_001032260.1

    Status: PROVISIONAL

    Source sequence(s)
    BC105820
    UniProtKB/TrEMBL
    Q3B8R7
    Related
    ENSRNOP00000015863.5, ENSRNOT00000015864.6
    Conserved Domains (1) summary
    pfam06984
    Location:66151
    MRP-L47; Mitochondrial 39-S ribosomal protein L47 (MRP-L47)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005101.4 Reference Rnor_6.0 Primary Assembly

    Range
    119128311..119139451 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008760912.1XP_008759134.1  39S ribosomal protein L47, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_008759134.1

    Conserved Domains (1) summary
    cl09943
    Location:139
    Ribosomal_L29_HIP; Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it ...

Alternate Rn_Celera

Genomic

  1. AC_000070.1 Alternate Rn_Celera

    Range
    110611433..110622572 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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