Format

Send to:

Choose Destination

Supv3l1 Suv3 like RNA helicase [ Rattus norvegicus (Norway rat) ]

Gene ID: 294385, updated on 12-Aug-2018

Summary

Official Symbol
Supv3l1provided by RGD
Official Full Name
Suv3 like RNA helicaseprovided by RGD
Primary source
RGD:1305565
See related
Ensembl:ENSRNOG00000000392
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Annotation information
Annotation category: partial on reference assembly
Expression
Biased expression in Heart (RPKM 139.8), Kidney (RPKM 116.6) and 9 other tissues See more
Orthologs

Genomic context

See Supv3l1 in Genome Data Viewer
Location:
20q11
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (32057530..32080170, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 20 NC_005119.3 (33844945..33865381, complement)

Chromosome 20 - NC_005119.4Genomic Context describing neighboring genes Neighboring gene hexokinase 1 Neighboring gene hexokinase domain containing 1 Neighboring gene VPS26 retromer complex component A Neighboring gene uncharacterized LOC108353232 Neighboring gene serglycin

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Clone Names

  • MGC109049

Gene Ontology Provided by RGD

Function Evidence Code Pubs
3'-5' RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 
3'-5' RNA helicase activity ISO
Inferred from Sequence Orthology
more info
 
3'-5' RNA helicase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATP-dependent RNA helicase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ATP-dependent RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 
ATP-dependent RNA helicase activity ISO
Inferred from Sequence Orthology
more info
 
ATP-dependent RNA helicase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA binding ISO
Inferred from Sequence Orthology
more info
 
DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 
DNA helicase activity ISO
Inferred from Sequence Orthology
more info
 
DNA helicase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 
double-stranded RNA binding ISO
Inferred from Sequence Orthology
more info
 
double-stranded RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
hydrolase activity, acting on acid anhydrides IEA
Inferred from Electronic Annotation
more info
 
protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 
protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 
DNA duplex unwinding ISO
Inferred from Sequence Orthology
more info
 
DNA duplex unwinding ISS
Inferred from Sequence or Structural Similarity
more info
 
DNA recombination IEA
Inferred from Electronic Annotation
more info
 
DNA recombination ISO
Inferred from Sequence Orthology
more info
 
DNA recombination ISS
Inferred from Sequence or Structural Similarity
more info
 
RNA catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA catabolic process ISO
Inferred from Sequence Orthology
more info
 
RNA catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
chromatin maintenance IEA
Inferred from Electronic Annotation
more info
 
chromatin maintenance ISO
Inferred from Sequence Orthology
more info
 
chromatin maintenance ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial RNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 
mitochondrial RNA 3'-end processing ISO
Inferred from Sequence Orthology
more info
 
mitochondrial RNA 3'-end processing ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial RNA surveillance ISO
Inferred from Sequence Orthology
more info
 
mitochondrial RNA surveillance ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 
mitochondrial mRNA catabolic process ISO
Inferred from Sequence Orthology
more info
 
mitochondrial mRNA catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 
mitochondrial mRNA surveillance ISO
Inferred from Sequence Orthology
more info
 
mitochondrial mRNA surveillance ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial ncRNA surveillance IEA
Inferred from Electronic Annotation
more info
 
mitochondrial ncRNA surveillance ISO
Inferred from Sequence Orthology
more info
 
mitochondrial ncRNA surveillance ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrion morphogenesis IEA
Inferred from Electronic Annotation
more info
 
mitochondrion morphogenesis ISO
Inferred from Sequence Orthology
more info
 
mitochondrion morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 
negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
negative regulation of apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of cell growth IEA
Inferred from Electronic Annotation
more info
 
positive regulation of cell growth ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cell growth ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of mitochondrial RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 
positive regulation of mitochondrial RNA catabolic process ISO
Inferred from Sequence Orthology
more info
 
positive regulation of mitochondrial RNA catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
mitochondrial degradosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial degradosome IEA
Inferred from Electronic Annotation
more info
 
mitochondrial degradosome ISO
Inferred from Sequence Orthology
more info
 
mitochondrial degradosome ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial matrix ISO
Inferred from Sequence Orthology
more info
 
mitochondrial matrix ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial nucleoid IEA
Inferred from Electronic Annotation
more info
 
mitochondrial nucleoid ISO
Inferred from Sequence Orthology
more info
 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 
mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
ATP-dependent RNA helicase SUPV3L1, mitochondrial
Names
SUV3-like helicase
SUV3-like protein 1
suppressor of var1 3-like protein 1
NP_001012480.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012462.1NP_001012480.1  ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor

    See identical proteins and their annotated locations for NP_001012480.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089883
    UniProtKB/Swiss-Prot
    Q5EBA1
    Related
    ENSRNOP00000000441.6, ENSRNOT00000000441.6
    Conserved Domains (3) summary
    COG0513
    Location:208500
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00079
    Location:351486
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam12513
    Location:626672
    SUV3_C; Mitochondrial degradasome RNA helicase subunit C terminal

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005119.4 Reference Rnor_6.0 Primary Assembly

    Range
    32057530..32080170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000088.1 Alternate Rn_Celera

    Range
    31798626..31819177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center