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Btn3a2 butyrophilin, subfamily 3, member A2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 294268, updated on 3-Apr-2024

Summary

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Official Symbol
Btn3a2provided by RGD
Official Full Name
butyrophilin, subfamily 3, member A2provided by RGD
Primary source
RGD:1598538
See related
Ensembl:ENSRNOG00000068592 AllianceGenome:RGD:1598538
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Btnl4; RGD1562488
Expression
Biased expression in Adrenal (RPKM 4.1), Spleen (RPKM 2.8) and 6 other tissues See more
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Genomic context

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Location:
20p12
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (4397659..4410150)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (4398254..4405681)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (4240270..4247115, complement)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene butyrophilin-like 6, pseudogene 1 Neighboring gene butyrophilin-like 5 Neighboring gene uncharacterized LOC134483778 Neighboring gene testis expressed basic protein 1 Neighboring gene uncharacterized LOC108349035 Neighboring gene butyrophilin-like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The genomic sequence and comparative analysis of the rat major histocompatibility complex. Hurt P, et al. Genome Res, 2004 Apr. PMID 15060004, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
butyrophilin subfamily 3 member A2
Names
butyrophilin-like 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166344.1 → NP_001159816.1  butyrophilin subfamily 3 member A2 precursor

    Status: INFERRED

    Source sequence(s)
    BX883043
    UniProtKB/TrEMBL
    F7F1D5
    Related
    ENSRNOP00000034717.5, ENSRNOT00000029451.5
    Conserved Domains (4) summary
    cd05713
    Location:45 → 145
    Ig_MOG_like; Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)
    smart00410
    Location:39 → 144
    IG_like; Immunoglobulin like
    cd13733
    Location:345 → 499
    SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty
    cl11960
    Location:148 → 232
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    4397659..4410150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279013.1 → XP_063135083.1  butyrophilin subfamily 3 member A2 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JY27

  2. XM_063279014.1 → XP_063135084.1  butyrophilin subfamily 3 member A2 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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