Format

Send to:

Choose Destination

Neurog1 neurogenin 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 29410, updated on 13-Aug-2019

Summary

Official Symbol
Neurog1provided by RGD
Official Full Name
neurogenin 1provided by RGD
Primary source
RGD:3167
See related
Ensembl:ENSRNOG00000022405
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ngn1; Neurod3
Summary
may play a role in neuronal differentiation [RGD, Feb 2006]
Orthologs

Genomic context

See Neurog1 in Genome Data Viewer
Location:
17p14
Exon count:
1
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (9154656..9156175)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 17 NC_005116.3 (11315715..11317234)

Chromosome 17 - NC_005116.4Genomic Context describing neighboring genes Neighboring gene hypothetical LOC100365564 Neighboring gene uncharacterized LOC108348501 Neighboring gene uncharacterized LOC102547185 Neighboring gene uncharacterized LOC108348503

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
E-box binding ISO
Inferred from Sequence Orthology
more info
PubMed 
E-box binding ISS
Inferred from Sequence or Structural Similarity
more info
 
chromatin binding ISO
Inferred from Sequence Orthology
more info
PubMed 
chromatin binding ISS
Inferred from Sequence or Structural Similarity
more info
 
protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 
protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
PubMed 
sequence-specific double-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
PubMed 
Process Evidence Code Pubs
auditory behavior IEA
Inferred from Electronic Annotation
more info
 
auditory behavior ISO
Inferred from Sequence Orthology
more info
PubMed 
cell fate commitment IEA
Inferred from Electronic Annotation
more info
 
cell fate commitment ISO
Inferred from Sequence Orthology
more info
PubMed 
cochlea development ISO
Inferred from Sequence Orthology
more info
PubMed 
cochlea morphogenesis IEA
Inferred from Electronic Annotation
more info
 
cochlea morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
craniofacial suture morphogenesis IEA
Inferred from Electronic Annotation
more info
 
craniofacial suture morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
genitalia development ISO
Inferred from Sequence Orthology
more info
PubMed 
genitalia morphogenesis IEA
Inferred from Electronic Annotation
more info
 
genitalia morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
hard palate morphogenesis IEA
Inferred from Electronic Annotation
more info
 
hard palate morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
inner ear development ISO
Inferred from Sequence Orthology
more info
PubMed 
inner ear morphogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
learned vocalization behavior IEA
Inferred from Electronic Annotation
more info
 
learned vocalization behavior ISO
Inferred from Sequence Orthology
more info
PubMed 
mastication IEA
Inferred from Electronic Annotation
more info
 
mastication ISO
Inferred from Sequence Orthology
more info
PubMed 
negative regulation of relaxation of muscle IEA
Inferred from Electronic Annotation
more info
 
negative regulation of relaxation of muscle ISO
Inferred from Sequence Orthology
more info
PubMed 
negative regulation of saliva secretion IEA
Inferred from Electronic Annotation
more info
 
negative regulation of saliva secretion ISO
Inferred from Sequence Orthology
more info
PubMed 
nervous system development NAS
Non-traceable Author Statement
more info
PubMed 
neurogenesis ISO
Inferred from Sequence Orthology
more info
PubMed 
neuromuscular process controlling balance IEA
Inferred from Electronic Annotation
more info
 
neuromuscular process controlling balance ISO
Inferred from Sequence Orthology
more info
PubMed 
neuron differentiation IEA
Inferred from Electronic Annotation
more info
 
neuron differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
peristalsis IEA
Inferred from Electronic Annotation
more info
 
peristalsis ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of DNA-binding transcription factor activity ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of exit from mitosis IEA
Inferred from Electronic Annotation
more info
 
positive regulation of exit from mitosis ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of neuron differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of neuron differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
PubMed 
positive regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of muscle organ development IEA
Inferred from Electronic Annotation
more info
 
regulation of muscle organ development ISO
Inferred from Sequence Orthology
more info
PubMed 
regulation of neuron differentiation ISO
Inferred from Sequence Orthology
more info
PubMed 
thorax and anterior abdomen determination IEA
Inferred from Electronic Annotation
more info
 
thorax and anterior abdomen determination ISO
Inferred from Sequence Orthology
more info
PubMed 
trigeminal nerve development IEA
Inferred from Electronic Annotation
more info
 
trigeminal nerve development ISO
Inferred from Sequence Orthology
more info
PubMed 
vestibulocochlear nerve formation IEA
Inferred from Electronic Annotation
more info
 
vestibulocochlear nerve formation ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
neuronal cell body ISO
Inferred from Sequence Orthology
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
perikaryon IEA
Inferred from Electronic Annotation
more info
 
perikaryon ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
neurogenin-1
Names
NGN-1
neurogenic basic-helix-loop-helix protein
neurogenic differentiation 3
neurogenic differentiation factor 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019207.1NP_062080.1  neurogenin-1

    See identical proteins and their annotated locations for NP_062080.1

    Status: PROVISIONAL

    Source sequence(s)
    U67777
    UniProtKB/Swiss-Prot
    P70595
    Related
    ENSRNOP00000015916.2, ENSRNOT00000015916.3
    Conserved Domains (1) summary
    cd00083
    Location:91150
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005116.4 Reference Rnor_6.0 Primary Assembly

    Range
    9154656..9156175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000085.1 Alternate Rn_Celera

    Range
    8450050..8451569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center