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Pdzd4 PDZ domain containing 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 293856, updated on 10-Oct-2019

Summary

Official Symbol
Pdzd4provided by RGD
Official Full Name
PDZ domain containing 4provided by RGD
Primary source
RGD:1561214
See related
Ensembl:ENSRNOG00000056174
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561214
Expression
Biased expression in Brain (RPKM 54.8), Spleen (RPKM 7.3) and 3 other tissues See more
Orthologs

Genomic context

See Pdzd4 in Genome Data Viewer
Location:
Xq37
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (156963343..156993591)
106 current Rn_Celera (GCF_000002265.2) 1 AC_000069.1 (136329561..136359280)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (152711639..152741657)

Chromosome X - NC_005120.4Genomic Context describing neighboring genes Neighboring gene arginine vasopressin receptor 2 Neighboring gene L1 cell adhesion molecule Neighboring gene signal sequence receptor subunit 4 Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
PDZ domain-containing protein 4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135836.1NP_001129308.1  PDZ domain-containing protein 4

    Status: PROVISIONAL

    Source sequence(s)
    AC096338
    UniProtKB/TrEMBL
    D3ZLI9
    Related
    ENSRNOP00000072313.1, ENSRNOT00000077109.1
    Conserved Domains (1) summary
    cd00992
    Location:130212
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005120.4 Reference Rnor_6.0 Primary Assembly

    Range
    156963343..156993591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006229562.3XP_006229624.1  PDZ domain-containing protein 4 isoform X1

    Conserved Domains (1) summary
    cd00992
    Location:136218
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
  2. XM_006229564.3XP_006229626.1  PDZ domain-containing protein 4 isoform X2

  3. XM_006229565.3XP_006229627.1  PDZ domain-containing protein 4 isoform X3

    Conserved Domains (1) summary
    cd00992
    Location:19103
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    136329561..136359280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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