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Ctu1 cytosolic thiouridylase subunit 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 292847, updated on 13-Aug-2019

Summary

Official Symbol
Ctu1provided by RGD
Official Full Name
cytosolic thiouridylase subunit 1provided by RGD
Primary source
RGD:1308740
See related
Ensembl:ENSRNOG00000018334
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Atpbd3; RGD1308740
Expression
Biased expression in Thymus (RPKM 25.4), Spleen (RPKM 24.2) and 9 other tissues See more
Orthologs

Genomic context

See Ctu1 in Genome Data Viewer
Location:
1q22
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (99599608..99605412)
106 current Rn_Celera (GCF_000002265.2) 1 AC_000069.1 (88384549..88390341)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (100668356..100674148)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene CEA cell adhesion molecule 18 Neighboring gene sialic acid binding Ig-like lectin 8 Neighboring gene kallikrein related-peptidase 14 Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 pseudogene

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
tRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
protein urmylation IEA
Inferred from Electronic Annotation
more info
 
tRNA thio-modification ISS
Inferred from Sequence or Structural Similarity
more info
 
tRNA wobble position uridine thiolation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
tRNA wobble uridine modification ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cytosol ISS
Inferred from Sequence or Structural Similarity
more info
 
cytosolic tRNA wobble base thiouridylase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
cytoplasmic tRNA 2-thiolation protein 1
Names
ATP binding domain 3
ATP-binding domain-containing protein 3
cytoplasmic tRNA adenylyltransferase 1
cytosolic thiouridylase subunit 1 homolog
NP_001099721.1
XP_006229046.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106251.1NP_001099721.1  cytoplasmic tRNA 2-thiolation protein 1

    See identical proteins and their annotated locations for NP_001099721.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473979
    UniProtKB/Swiss-Prot
    B1WBV0
    Related
    ENSRNOP00000024690.4, ENSRNOT00000024690.4
    Conserved Domains (3) summary
    TIGR00269
    Location:207308
    TIGR00269; TIGR00269 family protein
    COG0037
    Location:29329
    TilS; tRNA(Ile)-lysidine synthase TilS/MesJ [Translation, ribosomal structure and biogenesis]
    cd01993
    Location:54243
    Alpha_ANH_like_II; This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    99599608..99605412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006228984.3XP_006229046.1  cytoplasmic tRNA 2-thiolation protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006229046.1

    UniProtKB/Swiss-Prot
    B1WBV0
    Conserved Domains (3) summary
    TIGR00269
    Location:207308
    TIGR00269; TIGR00269 family protein
    COG0037
    Location:29329
    TilS; tRNA(Ile)-lysidine synthase TilS/MesJ [Translation, ribosomal structure and biogenesis]
    cd01993
    Location:54243
    Alpha_ANH_like_II; This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily ...

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    88384549..88390341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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