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Etfb electron transfer flavoprotein subunit beta [ Rattus norvegicus (Norway rat) ]

Gene ID: 292845, updated on 5-Aug-2018

Summary

Official Symbol
Etfbprovided by RGD
Official Full Name
electron transfer flavoprotein subunit betaprovided by RGD
Primary source
RGD:1303312
See related
Ensembl:ENSRNOG00000017851
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
human homolog plays a role in fatty acid metabolism and beta-oxidation [RGD, Feb 2006]
Expression
Biased expression in Heart (RPKM 1798.8), Liver (RPKM 1209.7) and 8 other tissues See more
Orthologs

Genomic context

See Etfb in Genome Data Viewer
Location:
1q22
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (98472776..98486940, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (99549581..99563745, complement)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene IgLON family member 5 Neighboring gene V-set and immunoglobulin domain containing 10 like Neighboring gene claudin domain containing 2 Neighboring gene natural killer cell granule protein 7

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC94808

Gene Ontology Provided by RGD

Function Evidence Code Pubs
electron transfer activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
electron transfer activity ISO
Inferred from Sequence Orthology
more info
 
electron transfer activity ISS
Inferred from Sequence or Structural Similarity
more info
 
molecular_function ND
No biological Data available
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
electron transport chain IEA
Inferred from Electronic Annotation
more info
 
fatty acid beta-oxidation using acyl-CoA dehydrogenase ISO
Inferred from Sequence Orthology
more info
 
fatty acid beta-oxidation using acyl-CoA dehydrogenase ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial matrix ISO
Inferred from Sequence Orthology
more info
 
mitochondrial matrix ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
electron transfer flavoprotein subunit beta
Names
beta-ETF
electron transfer flavoprotein beta subunit
electron transferring flavoprotein, beta polypeptide
electron-transfer-flavoprotein, beta polypeptide

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004220.1NP_001004220.1  electron transfer flavoprotein subunit beta

    See identical proteins and their annotated locations for NP_001004220.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079351
    UniProtKB/Swiss-Prot
    Q68FU3
    Related
    ENSRNOP00000024083.3, ENSRNOT00000024083.5
    Conserved Domains (1) summary
    cd01714
    Location:5210
    ETF_beta; The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an ...

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    98472776..98486940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    88129019..88143212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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