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Foxd3 forkhead box D3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 29203, updated on 30-Sep-2021

Summary

Official Symbol
Foxd3provided by RGD
Official Full Name
forkhead box D3provided by RGD
Primary source
RGD:621715
See related
EnsemblRapid:ENSRNOG00000066522
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
CWH3; Hfh2; Genesis
Summary
belongs to the forkhead family of transcription factors, function not yet known [RGD, Feb 2006]
Orthologs
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Genomic context

See Foxd3 in Genome Data Viewer
Location:
5q33
Exon count:
1
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (114334693..114337788)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (118346283..118349120)

Chromosome 5 - NC_051340.1Genomic Context describing neighboring genes Neighboring gene similar to non-SMC element 1 homolog Neighboring gene uncharacterized LOC102556374 Neighboring gene ALG6, alpha-1,3-glucosyltransferase Neighboring gene integrin subunit beta 3 binding protein Neighboring gene EF-hand calcium binding domain 7

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within cellular response to leukemia inhibitory factor ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within embryonic placenta development ISO
Inferred from Sequence Orthology
more info
 
involved_in in utero embryonic development ISO
Inferred from Sequence Orthology
more info
 
involved_in in utero embryonic development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription, DNA-templated TAS
Traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within trophectodermal cell differentiation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in chromatin ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
forkhead box protein D3
Names
HFH-2
HNF3/FH transcription factor genesis
hepatocyte nuclear factor 3 forkhead homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051340.1 Reference mRatBN7.2 Primary Assembly

    Range
    114334693..114337788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008763960.3XP_008762182.2  forkhead box protein D3

    Related
    ENSRNOP00000089513.1, ENSRNOT00000111078.1
    Conserved Domains (1) summary
    cd20047
    Location:130226
    FH_FOXD3; Forkhead (FH) domain found in Forkhead box protein D3 (FOXD3) and similar proteins
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