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Usp6nl USP6 N-terminal like [ Rattus norvegicus (Norway rat) ]

Gene ID: 291309, updated on 22-Nov-2020

Summary

Official Symbol
Usp6nlprovided by RGD
Official Full Name
USP6 N-terminal likeprovided by RGD
Primary source
RGD:1311786
See related
Ensembl:ENSRNOG00000017644
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Lung (RPKM 82.8), Spleen (RPKM 71.1) and 9 other tissues See more
Orthologs

Genomic context

See Usp6nl in Genome Data Viewer
Location:
17q12.3
Exon count:
18
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (75759428..75887108, complement)
106 current Rn_Celera (GCF_000002265.2) 17 AC_000085.1 (71290276..71414326, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 17 NC_005116.3 (77415385..77542080, complement)

Chromosome 17 - NC_005116.4Genomic Context describing neighboring genes Neighboring gene CUGBP, Elav-like family member 2 Neighboring gene uncharacterized LOC108353152 Neighboring gene uncharacterized LOC108348587 Neighboring gene small EDRK-rich factor 2 pseudogene Neighboring gene enoyl CoA hydratase domain containing 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
GTPase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
GTPase activator activity ISO
Inferred from Sequence Orthology
more info
 
small GTPase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
small GTPase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
Golgi organization ISO
Inferred from Sequence Orthology
more info
 
activation of GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane to endosome transport ISO
Inferred from Sequence Orthology
more info
 
positive regulation of GTPase activity ISO
Inferred from Sequence Orthology
more info
 
regulation of Golgi organization ISO
Inferred from Sequence Orthology
more info
 
NOT regulation of cilium assembly ISO
Inferred from Sequence Orthology
more info
 
retrograde transport, plasma membrane to Golgi ISO
Inferred from Sequence Orthology
more info
 
virion assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasmic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasmic vesicle ISO
Inferred from Sequence Orthology
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
USP6 N-terminal-like protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106120.1NP_001099590.1  USP6 N-terminal-like protein

    See identical proteins and their annotated locations for NP_001099590.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473990
    UniProtKB/TrEMBL
    D3ZL57
    Related
    ENSRNOP00000046740.2, ENSRNOT00000046266.2
    Conserved Domains (1) summary
    smart00164
    Location:97312
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005116.4 Reference Rnor_6.0 Primary Assembly

    Range
    75759428..75887108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006254233.2XP_006254295.1  USP6 N-terminal-like protein isoform X2

    See identical proteins and their annotated locations for XP_006254295.1

    UniProtKB/TrEMBL
    D3ZL57
    Conserved Domains (1) summary
    smart00164
    Location:97312
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
  2. XM_006254232.3XP_006254294.1  USP6 N-terminal-like protein isoform X1

    Conserved Domains (1) summary
    smart00164
    Location:114329
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
  3. XM_017600492.1XP_017455981.1  USP6 N-terminal-like protein isoform X3

    Conserved Domains (1) summary
    smart00164
    Location:18233
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
  4. XM_006254236.3XP_006254298.1  USP6 N-terminal-like protein isoform X3

    Conserved Domains (1) summary
    smart00164
    Location:18233
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

Alternate Rn_Celera

Genomic

  1. AC_000085.1 Alternate Rn_Celera

    Range
    71290276..71414326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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