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Aga aspartylglucosaminidase [ Rattus norvegicus (Norway rat) ]

Gene ID: 290923, updated on 26-Sep-2017
Official Symbol
Agaprovided by RGD
Official Full Name
aspartylglucosaminidaseprovided by RGD
Primary source
RGD:1309646
See related
Ensembl:ENSRNOG00000000108
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Orthologs
Location:
16p11
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (41222225..41234169, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 16 NC_005115.3 (40992072..41004008, complement)

Chromosome 16 - NC_005115.4Genomic Context describing neighboring genes Neighboring gene nei-like DNA glycosylase 3 Neighboring gene cytochrome b-c1 complex subunit 6, mitochondrial pseudogene Neighboring gene poly(A) binding protein, cytoplasmic 1, pseudogene 1 Neighboring gene hypothetical protein LOC680911

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Markers

Homology

Clone Names

  • MGC112709

Gene Ontology Provided by RGD

Function Evidence Code Pubs
N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity IDA
Inferred from Direct Assay
more info
PubMed 
N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity ISO
Inferred from Sequence Orthology
more info
PubMed 
peptidase activity IEA
Inferred from Electronic Annotation
more info
 
protein self-association IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
protein deglycosylation IEA
Inferred from Electronic Annotation
more info
 
protein deglycosylation ISO
Inferred from Sequence Orthology
more info
PubMed 
protein maturation IEA
Inferred from Electronic Annotation
more info
 
protein maturation ISO
Inferred from Sequence Orthology
more info
PubMed 
proteolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
PubMed 
extracellular exosome IEA
Inferred from Electronic Annotation
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
PubMed 
extracellular space ISO
Inferred from Sequence Orthology
more info
PubMed 
lysosome IDA
Inferred from Direct Assay
more info
PubMed 
lysosome ISO
Inferred from Sequence Orthology
more info
PubMed 
Preferred Names
N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase
Names
N4-(N-acetyl-beta-glucosaminyl)-L-asparagine amidase
glycosylasparaginase
NP_001026811.1
XP_006253173.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031641.1NP_001026811.1  N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase precursor

    See identical proteins and their annotated locations for NP_001026811.1

    Status: PROVISIONAL

    Source sequence(s)
    BC098718
    UniProtKB/Swiss-Prot
    P30919
    Related
    ENSRNOP00000000120.3, ENSRNOT00000000120.3
    Conserved Domains (1) summary
    cd04513
    Location:29331
    Glycosylasparaginase; Glycosylasparaginase and similar proteins

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005115.4 Reference Rnor_6.0 Primary Assembly

    Range
    41222225..41234169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006253111.3XP_006253173.1  N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase isoform X1

    Conserved Domains (1) summary
    cd04513
    Location:29350
    Glycosylasparaginase; Glycosylasparaginase and similar proteins

Alternate Rn_Celera

Genomic

  1. AC_000084.1 Alternate Rn_Celera

    Range
    36605222..36617080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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