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C16orf72 chromosome 16 open reading frame 72 [ Homo sapiens (human) ]

Gene ID: 29035, updated on 21-Dec-2019

Summary

Official Symbol
C16orf72provided by HGNC
Official Full Name
chromosome 16 open reading frame 72provided by HGNC
Primary source
HGNC:HGNC:30103
See related
Ensembl:ENSG00000182831
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRO0149
Expression
Ubiquitous expression in bone marrow (RPKM 30.6), brain (RPKM 9.3) and 25 other tissues See more
Orthologs

Genomic context

See C16orf72 in Genome Data Viewer
Location:
16p13.2
Exon count:
5
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (9091377..9121635)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (9185537..9213555)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 11265 Neighboring gene Sharpr-MPRA regulatory region 8137 Neighboring gene Sharpr-MPRA regulatory region 4742/14408 Neighboring gene ribosomal protein L21 pseudogene 119

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ41272

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_014117.3NP_054836.2  UPF0472 protein C16orf72

    See identical proteins and their annotated locations for NP_054836.2

    Status: VALIDATED

    Source sequence(s)
    AC087190
    Consensus CDS
    CCDS10538.1
    UniProtKB/Swiss-Prot
    Q14CZ0
    Related
    ENSP00000331720.7, ENST00000327827.12
    Conserved Domains (1) summary
    pfam15251
    Location:25273
    DUF4588; Domain of unknown function (DUF4588)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    9091377..9121635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011522462.3XP_011520764.1  UPF0472 protein C16orf72 isoform X1

    Conserved Domains (1) summary
    pfam15251
    Location:25196
    DUF4588; Domain of unknown function (DUF4588)
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